BAC Information

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BAC

Clone NameMSMg01-453A23
Chromosome7 (Build37)
Map Location 111,221,134 - 111,484,297
singlet/doubletdoublet
Overlap geneOlfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34
Upstream geneOlfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644
Downstream gene9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453A23.T7 (MSMg01no453_a23.b1)MSMg01-453A23.TJ (MSMg01no453_a23.g1)
ACCAG540164AG540165
length773777
length of high quality
(start - end)		596 (74 - 669)611 (76 - 686)
definitionCHROMAT_FILE: MSMg01no453_a23.b1 PHD_FILE: MSMg01no453_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:48 2005CHROMAT_FILE: MSMg01no453_a23.g1 PHD_FILE: MSMg01no453_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(111,221,134 - 111,221,729)(111,483,688 - 111,484,297)
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGCGCGG
AATTCCTTTTAGGGACAATAATGGTAATAGGGACCCATAGATAAAAATGA
AGACATTAGATGAACTTAAATTTTAATCTGTATTATTCTTAGTTGAAGAA
AGTACCTAACCCCTCCTTCAAGGGCTTCATTTTTTACCTGTAAATAGATA
CAGCCATATATCATAGAATTATTGGGGTGATTTGAAAGAATATGAGAGAG
CATTGCGACTCCTGCATGCCATGTAGCACTTGGGGTTAATTATGTATACG
TTCCTAACATTAAGTCCTAATAGGAATTCATAATTGATCTTATTGAGCCC
TAATAGAAAATGGACACTGTCTAAACAGCACAGAATGACTTAAAAGTTCC
CCTTTGAAAACAAACCTGCAGATACATATTGAAGAAATAATGTTGAGTAA
TAAAATATCACATTTTACTGCTTGTATAAATTTAGATACAGTATTAACAC
TTCCATCCAGGTCCATGTAATCCACTCTTGAGAAGCCAGAGAATGAGCTA
CATATGTAGTGTGCATGAGTCTCAAAGAAATAAGAAACACTGTTGAAATG
AGCGTGATAGGCAAAATAACTCTCAAAAGATGTGTTCACATTTATCCCAT
GAGTTTCGTGTTAAAAAAAGAAATTTTGCATATGCAATTAAGATTATGTA
TATTGAGATAATATTTTTCTTCTGTTACTTTTGAATGGATTCATAATAGT
AAACTAAGCATGTAAGTACTTAN

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTATGTGTATGAGGTAACACAGGA
GACAGAGGTGATAAGGCCACATTGAACCACACACTTGTGAAAGGTGATCA
GAACACAGTGATTTCAACATCTGCAACTTCTTACCCCAGTAGGCCCGGAC
AGCTGTTAGCTCTGAAATGATAAAACATTTGGAGACTTTTATTAGAAGCA
AAGATTTGAAAGAGGTAATACTTTGCTCTCTCTAGAGGTAAGAAAGGGTG
GTATAAGAAGAGGTTTATGAGAGGCTTAAAAAGGTTTAAAGGTCCTCTCT
GGTAAGCAAGAACACTTTAGGGTGCTCCCTCGGACACAGCTGCATCGTCC
TTCTCACGGACCGCCCCTCCCTGACTTCCCTGCTATCTTTACCATAGGCA
CTGCCTGCTGCTCTCCTCACCTCTAAACTTTTGTAGCATGCCACTCAGAT
CAGGAGCTTGGAATACCATGCTCAGTTTCTTAGAAACTGCTTTTGGCTTC
TTCAGTGTCCAGATCTGACTCCTAGGGATGGAGAAATAGTTTAATCTTTG
CATCTGTCATGTTGTTGTCTTGCTAACACAATGGCCTTTCTCTCCTTCCA
CATCACTGATGTGCTTCATACCTGAGGAGCCTAAAAGAAAGCCCTGACTG
TGAATCAGAAGCCACAGGCCTCTGTGAAATGTTCCCTGTGACACTGGGAG
GATCTAACCTTCTTTGAGTCACAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_a23.b1 MSMg01no453_a23.b1 CHROMAT_FILE:
MSMg01no453_a23.b1 PHD_FILE: MSMg01no453_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:48 2005
         (596 letters)



>mm_chr7_111220934_111221929
          Length = 996

 Score = 1083 bits (560), Expect = 0.0
 Identities = 587/596 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaatagggacccatagataaaaatgaagacattagatgaacttaaattttaatctgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaatagggacccatagataaaaatgaagacattagatgaacttaaattttaatctgtat 260

                                                                       
Query: 61  tattcttagttgaagaaagtacctaacccctccttcaagggcttcattttttacctgtaa 120
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tattcttagctgaagaaagtacctaacccctccttgaagggcttcattttttacctgtaa 320

                                                                       
Query: 121 atagatacagccatatatcatagaattattggggtgatttgaaagaatatgagagagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagatacagccatatatcatagaattattggggtgatttgaaagaatatgagagagcat 380

                                                                       
Query: 181 tgcgactcctgcatgccatgtagcacttggggttaattatgtatacgttcctaacattaa 240
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcggctcctgaatgccatgtagcacttggggttaattatgtatacgttcctaacattaa 440

                                                                       
Query: 241 gtcctaataggaattcataattgatcttattgagccctaatagaaaatggacactgtcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcctaataggaattcataattgatcttattgagccctaatagaaaatggacactgtcta 500

                                                                       
Query: 301 aacagcacagaatgacttaaaagttcccctttgaaaacaaacctgcagatacatattgaa 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagcacagaatcacttaaaagttcccctttgaaaacaaacctgcagatacatattgaa 560

                                                                       
Query: 361 gaaataatgttgagtaataaaatatcacattttactgcttgtataaatttagatacagta 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 gaaataatgttgagtaataaaatatcacattttaccgcttgtataaatttagatacagta 620

                                                                       
Query: 421 ttaacacttccatccaggtccatgtaatccactcttgagaagccagagaatgagctacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaacacttccatccaggtccatgtaatccactcttgagaagccagagaatgagctacat 680

                                                                       
Query: 481 atgtagtgtgcatgagtctcaaagaaataagaaacactgttgaaatgagcgtgataggca 540
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 atgtagtgtgcataagtctcaaagaaataagaaacactgttgaaatgagcatgataggca 740

                                                                   
Query: 541 aaataactctcaaaagatgtgttcacatttatcccatgagtttcgtgttaaaaaaa 596
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaataactctcaaaagatatgttcacatttatcccatgagtttcgtgttaaaaaaa 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_a23.g1 MSMg01no453_a23.g1 CHROMAT_FILE:
MSMg01no453_a23.g1 PHD_FILE: MSMg01no453_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:48 2005
         (611 letters)



>mm_chr7_111483488_111484498
          Length = 1011

 Score = 1071 bits (554), Expect = 0.0
 Identities = 596/610 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attatgtgtatgaggtaacacaggagacagaggtgataaggccacattgaaccacacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 attatgtgtatgaggtaacacaggagacagaggtgataaggccacattgaaccacacact 751

                                                                       
Query: 61  tgtgaaaggtgatcagaacacagtgatttcaacatctgcaacttcttaccccagtaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tgtgaaaggtgatcagaacacagtgatttcaacatctgcaacttcttaccccagtaggcc 691

                                                                       
Query: 121 cggacagctgttagctctgaaatgataaaacatttggagacttttattagaagcaaagat 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cggacagctgatagctctgaaatgataaaacatttggagacttttattagaagcaaagat 631

                                                                       
Query: 181 ttgaaagaggtaatactttgctctctctagaggtaagaaagggtggtataagaagaggtt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tcgaaagaggtaatactttgctctctctagaggtaagaaagggtggtataagaagaggtt 571

                                                                       
Query: 241 tatgagaggcttaaaaaggtttaaaggtcctctctggtaagcaagaacactttagggtgc 300
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 570 tatgagaggcttaaaaaagtttaaaggtcctctctggtaaacaagaacactttagggtgc 511

                                                                       
Query: 301 tccctcggacacagctgcatcgtccttctcacggaccgcccctccctgacttccctgcta 360
           ||||||||||||||||| |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 510 tccctcggacacagctgtatcgtcctcctcacagaacacccctccctgacttccctgcta 451

                                                                       
Query: 361 tctttaccataggcactgcctgctgctctcctcacctctaaacttttgtagcatgccact 420
           ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 450 tctttaccatagaaactgcctgctgctctcctcacctctgaacttttgtagcatgccact 391

                                                                       
Query: 421 cagatcaggagcttggaataccatgctcagtttcttagaaactgcttttggcttcttcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cagatcaggagcttggaataccatgctcagtttcttagaaactgcttttggcttcttcag 331

                                                                       
Query: 481 tgtccagatctgactcctagggatggagaaatagtttaatctttgcatctgtcatgttgt 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 330 tgtccagatctgactcctagggatggagaaatagtttaatctttacatctgtcatgttgt 271

                                                                       
Query: 541 tgtcttgctaacacaatggcctttctctccttccacatcactgatgtgcttcatacctga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgtcttgctaacacaatggcctttctctccttccacatcactgatgtgcttcatacctga 211

                     
Query: 601 ggagcctaaa 610
           ||| ||||||
Sbjct: 210 ggatcctaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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