BAC Information

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BAC

Clone NameMSMg01-453F11
Chromosome7 (Build37)
Map Location 60,995,881 - 61,176,303
singlet/doubletdoublet
Overlap geneLOC668789
Upstream geneEG620782, LOC100040692, Gm1865, LOC100040718
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453F11.T7 (MSMg01no453_f11.b1)MSMg01-453F11.TJ (MSMg01no453_f11.g1)
ACCAG540378AG540379
length765763
length of high quality
(start - end)		628 (54 - 681)547 (80 - 626)
definitionCHROMAT_FILE: MSMg01no453_f11.b1 PHD_FILE: MSMg01no453_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:11 2005CHROMAT_FILE: MSMg01no453_f11.g1 PHD_FILE: MSMg01no453_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,995,881 - 60,996,504)(61,175,758 - 61,176,303)
sequence
NNNNNNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTACTGCCTTTCATATTTTAGAAGAACCGTTTACCT
ATCCATCAGTGTAAAGTCGCTGGAGCCATTCTTTGTCCTATGTGTCTGGG
TCTGTCTATTCCTGGATTCATGCTCACTCAGCTTCTATATTCTTCTGCAT
CCTCCTTACAGCAGTATACTTCCTCAAGCTGTCCACATTAACGATGTCAA
CTACATCAGGCCTGGGGATAGTCAGTGTTAGCCTTAGAAAGGATGAGAGT
TGGTCATGGATATGCATGTAAAGGATACAAAACGTGCCAATGAAGAAAAT
CCTGGGAAAAGAAAAGGCAAAGTACTAAGGGAATTACTTGCTATGCTCTA
AAGCCTTCACCCAACTTGTCCTGTATCATGAGGTTGTCCAGAACTCAAAC
CCAGTTTTCTATAAATTCTACATTGAAACCTCAACACTCAAATAATTAAG
AAGGTATATTTGTTAAACTAGAAGAAGAGAAAGTTATTTTATTTACTTTT
CTATAGTTGTCTTATGTTATATGAAAAATAGAGTTTATTAAGACAAACAT
ATTACTCTTCATATAATAGAGTACTTTATTTAAATCTACTATAAAGTATG
TGTTTGGAAAGAGCTGGACACACAATTACGGCATTAGTGTAGCTGAAGAC
AAATTCCTCCCTTTCTTCTCTTAATTCATGTCATCTATAGTTCAATGAAC
GGGTGTTTTCTGAAT

NNNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATGTGAAACCATGAGCAG
AATGGAGACATATGAATTACTGCAAGCTGTACCATTTTTGGTCCCTGCTC
ATTCTTTGTTACAACCTGGTGCACTCTTAGCCTTACATGATTTCAAATAA
GATTTTTATTAATTACATTTCCAAATTTGTCTTACATAAATCACAGTACT
TACCCAGGTTCTAGGAATTATAAAAACTATGTATTTAAGATGACTCTATG
ATTTCATCTTAGACTTTGTATATTTGTCTGCTTATAGTGATAAGACATAA
ATGGTAAGTTTTCCATTTCACAGAGGAGAAAACTGAGGAGTACCATTGGT
GAGAAAAGCTGAAAACATGTTTTGAATCTCCTGACTAAGCTCCAAAACCC
AGGTAACTTTCTTCATTTGTACAATTCAGTTTTACAAGTAGCCAAACTCT
AATTTTATATCATAAAGAAGTAATTTGATTTATTCATTTTTTTCAAAATA
TTTAATATCAAAATGAGAGAGAGAGAGAGAGTATGTGTGTGTGTGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGNNANANANANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_f11.b1 MSMg01no453_f11.b1 CHROMAT_FILE:
MSMg01no453_f11.b1 PHD_FILE: MSMg01no453_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:11 2005
         (628 letters)



>mm_chr7_60995677_60996704
          Length = 1028

 Score = 1191 bits (616), Expect = 0.0
 Identities = 622/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtactgcctttcatattttagaagaaccgtttacctatccatcagtgtaaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtactgcctttcatattttagaagaaccgtttacctatccatcagtgtaaagt 264

                                                                       
Query: 65  cgctggagccattctttgtcctatgtgtctgggtctgtctattcctggattcatgctcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgctggagccattctttgtcctatgtgtctgggtctgtctattcctggattcatgctcac 324

                                                                       
Query: 125 tcagcttctatattcttctgcatcctccttacagcagtatacttcctcaagctgtccaca 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 tcagcttctatattcttctgcatcctccttacagcagcatacttcctcaagctgtccaca 384

                                                                       
Query: 185 ttaacgatgtcaactacatcaggcctggggatagtcagtgttagccttagaaaggatgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaacgatgtcaactacatcaggcctggggatagtcagtgttagccttagaaaggatgag 444

                                                                       
Query: 245 agttggtcatggatatgcatgtaaaggatacaaaacgtgccaatgaagaaaatcctggga 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttggtcgtggatatgcatgtaaaggatacaaaacgtgccaatgaagaaaatcctggga 504

                                                                       
Query: 305 aaagaaaaggcaaagtactaagggaattacttgctatgctctaaagccttcacccaactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagaaaaggcaaagtactaagggaattacttgctatgctctaaagccttcacccaactt 564

                                                                       
Query: 365 gtcctgtatcatgaggttgtccagaactcaaacccagttttctataaattctacattgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcctgtatcatgaggttgtccagaactcaaacccagttttctataaattctacattgaa 624

                                                                       
Query: 425 acctcaacactcaaataattaagaaggtatatttgttaaactagaagaagagaaagttat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acctcaacactcaaataattaagaaggtatatttgttaaactagaagaagagaaagttat 684

                                                                       
Query: 485 tttatttacttttctatagttgtcttatgttatatgaaaaatagagtttattaagacaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttatttacttttctatagttgtcttatgttatatgaaaaatagagtttattaagacaaa 744

                                                                       
Query: 545 catattactcttcatataatagagtactttatttaaatctactataaagtatgtgtttgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catattactcttcatataatagagtactttatttaaatctactataaagtatgtgtttgg 804

                                   
Query: 605 aaagagctggacacacaattacgg 628
           ||||||||||||||||||||||||
Sbjct: 805 aaagagctggacacacaattacgg 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_f11.g1 MSMg01no453_f11.g1 CHROMAT_FILE:
MSMg01no453_f11.g1 PHD_FILE: MSMg01no453_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:11 2005
         (547 letters)



>mm_chr7_61175619_61176565
          Length = 947

 Score = 1056 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatgtgaaaccatgagcagaatggagacatatgaattactgcaagctgtaccattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttatgtgaaaccatgagcagaatggagacatatgaattactgcaagctgtaccattttt 626

                                                                       
Query: 61  ggtccctgctcattctttgttacaacctggtgcactcttagccttacatgatttcaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtccctgctcattctttgttacaacctggtgcactcttagccttacatgatttcaaata 566

                                                                       
Query: 121 agatttttattaattacatttccaaatttgtcttacataaatcacagtacttacccaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agatttttattaattacatttccaaatttgtcttacataaatcacagtacttacccaggt 506

                                                                       
Query: 181 tctaggaattataaaaactatgtatttaagatgactctatgatttcatcttagactttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctaggaattataaaaactatgtatttaagatgactctatgatttcatcttagactttgt 446

                                                                       
Query: 241 atatttgtctgcttatagtgataagacataaatggtaagttttccatttcacagaggaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatttgtctgcttatagtgataagacataaatggtaagttttccatttcacagaggaga 386

                                                                       
Query: 301 aaactgaggagtaccattggtgagaaaagctgaaaacatgttttgaatctcctgactaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaactgaggagtaccattggtgagaaaagctgaaaacatgttttgaatctcctgactaag 326

                                                                       
Query: 361 ctccaaaacccaggtaactttcttcatttgtacaattcagttttacaagtagccaaactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccaaaacccaggtaactttcttcatttgtacaattcagttttacaagtagccaaactc 266

                                                                       
Query: 421 taattttatatcataaagaagtaatttgatttattcatttttttcaaaatatttaatatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taattttatatcataaagaagtaatttgatttattcatttttttcaaaatatttaatatc 206

                                                                       
Query: 481 aaaatgagagagagagagagagtatgtgtgtgtgtgagagagagagagagagagagagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaaatgagagagagagagagagtatgtgtgtgtgtgagagagagagagagagagagagag 146

                 
Query: 541 agagag 546
           ||||||
Sbjct: 145 agagag 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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