Query= MSMg01no455_j13.b1 MSMg01no455_j13.b1 CHROMAT_FILE:
MSMg01no455_j13.b1 PHD_FILE: MSMg01no455_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:09 2005
(589 letters)
>mm_chr7_37391483_37392472
Length = 990
Score = 1048 bits (542), Expect = 0.0
Identities = 578/590 (97%), Gaps = 1/590 (0%)
Strand = Plus / Plus
Query: 1 tgagcttc-aaacaatattttcctcattatctcactcaaatccaaaactctgaggatccc 59
|||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 201 tgagcttcaaaacaatattttcctcaacatctgactcaaatccaaaactctgaggatccc 260
Query: 60 tttgaaggttcactgtacttttagaaaaagtgactttctacatggaggaactccctgtgg 119
|||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |||
Sbjct: 261 tttgaaggttcactgtacttctagaaagagtgactttctacacggaggaactccccatgg 320
Query: 120 agaaccaacccaggcttcccaataattcctcaatgaaatcccccagtagaggcaacatac 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 agaaccaacccaggcttcccaataattcctcaatgaaatcccccagtagaggcaacatgc 380
Query: 180 gcaaggacagtcatttggcactgttttgccattagaagagaaatttggtccctgcctgag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaggacagtcatttggcactgttttgccattagaagagaaatttggtccctgcctgag 440
Query: 240 ccccactgttttctgtagagttcgctctgaggcactaacttgaaaaacactaatcacaga 299
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccactgaattctgtagagttcgctctgaggcactaacttgaaaaacactaatcacaga 500
Query: 300 tcacttttcttggagctaagacggttccttttcccctaggtgtcaggatctctaagttga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacttttcttggagctaagacggttccttttcccctaggtgtcaggatctctaagttga 560
Query: 360 cataattctgcacaaatcactctgcctgtgtaacttagaatgtcccaatcccctttggac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cataattctgcacaaatcactctgcctgtgtaacttagaatgtcccaatcccctttggac 620
Query: 420 cctggcctctgtaactgggccatcactcacttaatctcaccttatctttaaataaatgta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctggcctctgtaactgggccatcactcacttaatctcaccttatctttaaataaatgta 680
Query: 480 accagaagggacttgttcggctcgccacctcttgagtgatgtgaattatttatacagtct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accagaagggacttgttcggctcgccacctcttgagtgatgtgaattatttatacagtct 740
Query: 540 tcataggcatttgttaagctgcacacagtcaaagagagaggggaactgtg 589
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcataggcatttgttaagctgcacacagtcaaagagagaggggaactgtg 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space: 567420
Effective search space used: 567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_j13.g1 MSMg01no455_j13.g1 CHROMAT_FILE:
MSMg01no455_j13.g1 PHD_FILE: MSMg01no455_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:09 2005
(532 letters)
>mm_chr7_37541436_37542366
Length = 931
Score = 955 bits (494), Expect = 0.0
Identities = 519/532 (97%), Gaps = 9/532 (1%)
Strand = Plus / Minus
Query: 5 gaattctctcatcttggaagagaagcagggtggactttcatggatgtttgcacttcccct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaattctctcatcttggaagagaagcagggtggactttcatggatgtttgcacttcccct 583
Query: 65 gagcagagtcatgattctgtgtcccccacaattgcagttggcacatgggagcctgtagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gagcagagtcatgattctgtgtcccccacaattgcagttggcacatgggagcctgtagag 523
Query: 125 gtaaagcagagtgcatttgtaacttgtggtcttcagtaaggcagctcgactgtctataca 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 522 gtaaagcagagtgcatttgtaacttgtggtcttcagtaaggcagctcgactgtctacaca 463
Query: 185 cttgacagtctgaactctcgagagaagcacaatggataactgagcaatggctccgggaat 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 462 cttgacagtctgaactctcgagagaagcacaacggataactgagcaatggctccgggaat 403
Query: 245 tggtgtgtgggggtccagtccttgaaatgggcactttcaaattggccttatgtgtacaac 304
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 402 tgg-----gggggtccagtccttgaaatgggcactttcaaactggccttatgtgtacaac 348
Query: 305 tcagttctcactgggactcactgactcttccccctaacatctaaagagttgtgtctatt- 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tcagttctcactgggactcactgactcttccccctaacatctaaagagttgtgtctatta 288
Query: 364 ---aaaaacaagaggaatggatggcttgagtcaagcaggaattaagatttacatggaaaa 420
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaaaaaaaaaagaggaatggatggcttgagtcaagcaggaattaagatttacatggaaaa 228
Query: 421 taaggcaatcgatgtatgcaagattatttatctattcacacattcactagcccattcctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 taaggcaatcgatgtatgcaagattatttatctattcacacattcactagcccattcctc 168
Query: 481 catctgcactcatttattcactcattcacctataatccatctatctactcat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 catctgcactcatttattcactcattcacctataatccatctatctactcat 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space: 480762
Effective search space used: 480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
