Query= MSMg01no456_d10.b1 MSMg01no456_d10.b1 CHROMAT_FILE:
MSMg01no456_d10.b1 PHD_FILE: MSMg01no456_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:57 2005
(573 letters)
>mm_chr7_77344831_77345803
Length = 973
Score = 1029 bits (532), Expect = 0.0
Identities = 560/572 (97%), Gaps = 8/572 (1%)
Strand = Plus / Plus
Query: 4 ggaattccacttctc-cacagtaccattggtctaactactgcccctactctacaaatgct 62
|||||||||| ||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattccacagctcacacagt-----tggtctaactactgcccctactctacaaatgct 262
Query: 63 tgcttggatccacagccccaactgctacacagtaagagcaccaggctctcattaccgcaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgcttggatccacagccccaactgctacacagtaagagcaccaggctctcattaccgcaa 322
Query: 123 agcatgttgtggggcagagagaataggcagtctgattcttccaaacctcaaggaaaggtg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcatgttgtggggcagagagaataggcagtctgattcttccaaacctcaaggaaaggtg 382
Query: 183 tctcattgtttctgattaatgcgatggatcaagggcacattcctgagccaattgctgcca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctcattgtttctgattaatgcgatggatcaagggcacattcctgagccaattgctgcca 442
Query: 243 agtgagatttaatactttgattggtcacctgggtcacatggtatttcctgaagccagatg 302
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 agtgagatttaatactttgattggccacctgggtcacatggtatttcctgaagccagatg 502
Query: 303 tgggtctctcttggagccatatgcatgtggaagagggataaattaaatcctcaaatgaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgggtctctcttggagccatatgcatgtggaagagggataaattaaatcctcaaatgaaa 562
Query: 363 gtggttttgtccagaaagcaatgcatttgtcctttgaagcctccgaagctctgtgctagc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtggttttgtccagaaagcaatgcatttgtcctttgaagcctccgaagctctgtgctagc 622
Query: 423 ttttgcttacctttgcagtactcaacactcagaaaagatcatgctctgtgcctttccagg 482
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttcgcttacctttgcagtactcaacactcagaaaagatcatgctctgtgcctttccagg 682
Query: 483 catcctttggcataagctttgtcttgtccccttcagcctccaaaagtgcatctgctaggc 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 683 catcctttggcataagctttgtcttgtccccttcagcctccaaaagtgcatctgct-ggc 741
Query: 543 -aggccctccttcacttcacttgcaaatctag 573
|||||||||||||||||||||||||||||||
Sbjct: 742 caggccctccttcacttcacttgcaaatctag 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_d10.g1 MSMg01no456_d10.g1 CHROMAT_FILE:
MSMg01no456_d10.g1 PHD_FILE: MSMg01no456_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:57 2005
(243 letters)
>mm_chr7_77466121_77466761
Length = 641
Score = 429 bits (222), Expect = e-125
Identities = 237/242 (97%), Gaps = 2/242 (0%)
Strand = Plus / Minus
Query: 1 ctgttcttgtagatgtgaaggggaagcgtctcactaggagcagatcagcactcttatcaa 60
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 440 ctgttcttgtagatgtgaaggggaagcgtctcactaggagcagagcagtactcttatcaa 381
Query: 61 gaaatctgtgctaggctgcagggagtctagaaagtcaaggctgagcaccttggctgctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaaatctgtgctaggctgcagggagtctagaaagtcaaggctgagcaccttggctgctca 321
Query: 121 gttgtaaagcagcacacaaacgggtgagtagggtgagtattgttctcagggctgggccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttgtaaagcagcacacaaacgggtgagtagggtgagtattgttctcagggctgggccac 261
Query: 181 tatgactccatttttttttcatattttagagatgaactagtagttgtggctttttttttt 240
| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 tgtgactccatttttttt-catattttagagatgaactagtagttgtgg-tttttttttt 203
Query: 241 ca 242
||
Sbjct: 202 ca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 641
Length adjustment: 9
Effective length of query: 234
Effective length of database: 632
Effective search space: 147888
Effective search space used: 147888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
