BAC Information

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BAC

Clone NameMSMg01-456M17
Chromosome7 (Build37)
Map Location 99,284,299 - 99,284,711
singlet/doubletsinglet
Overlap geneDlg2
Upstream genenone
Downstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456M17.T7 (MSMg01no456_m17.b1)MSMg01-456M17.TJ (MSMg01no456_m17.g1)
ACCAG543012AG543013
length1,044773
length of high quality
(start - end)		---415 (76 - 490)
definitionCHROMAT_FILE: MSMg01no456_m17.b1 PHD_FILE: MSMg01no456_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:44 2005CHROMAT_FILE: MSMg01no456_m17.g1 PHD_FILE: MSMg01no456_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCACTGGAGCACCGTTCGNNCTTTTACTCATCGCCGCCCGTTCTTCTCCT
CTTTGAAGTAGCAGTGGTGACCAGGGGAGCCCTCCCTCTTCGCTCTATTC
CGGAGGACGTGTGGCGCGCGGCTCGNCGCCCCCTTCCGTGTCCGCTATGG
CTCCTCCCTCCCGCCGGTTTGTCTTTGATTTTATCGTACCCTGAACCATG
CGGCGCAGCCCCTCTTCCATTTCACCCGCTATTATCGGCTGACCATCGTT
AATTAGATTACGGGCGGTGGTGTCGGCGGCTGTGGGGGGGGGATTGTGTG
TATTCAGTGCGTACGTTATAGTGTATGTGTATCCGCGTTATTCTCATATA
CCTCGTTTTGCTGGCGTGTTCACACCCGTTGACCCCCCCTCCATCCTCAT
TTTAATTTATATTTTCCACCTTCACACATGGCATGCTCAGGAGAGCCGGA
CGCTTTTTGCTTGACCCTCCCCTCGGTGTTCCTCTTTTCCCCCCACCCTT
TTGCGCCCGCCGCGGGGGGGAGTTACACCGTAGTGCACGAAGTTCAGGCC
CGATATTGGCGGTGGTGCCCAAAGTAACAGTTGGTTAGGCCTTTATTTCA
TCAACCTTACGCGATTTATGCACCCGCCGTTAACGCCCACATCTTCTCTC
AGTGTGGGTATCCAAATGCTAATATATAATGCAACAAGAGCACCCGACCA
CAGTATGTGATGCCGCTACTGTTTTATCACCTGGCCATCCGACTTTACGC
GGCTCATAACGATTTTCGTATTACCGCCACTTACCCCGGGTACTTGAGAA
TCTCACCCACCGGCTTAGAGCGCGAAGTCGGAAGCGGAGAATCCGCCGCG
CCGAGTGTGGGATGACCCGCGAAGCGGAGTACGTCGCGCTTTGATTGCGC
GCCGAGATGATAGGACCGCGGACTAGGGTACGTCGGGACGCGCGGCTTAC
CCGTCGCCCGCGACGCGATTTTCGCGCCGGCGTCTGGCCGTGTAGAGATN
TGTTACCGCGCTGCGACCTTATTTCGTCACACTTCTCTCCCTCG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTTGGTCTGGTTTTGCATACACT
TGAGTCAGTATCCAAGTTCTCTTCTGTTTTTACAGCATGCACAGCAGCTT
CTGTCCCTCATCAGTGAGGTCTCATTTGACTGACTGTAGGCTCATCAGGG
CAGTGGCCATGTCTGTTCTACCTCTGATATCCAGGGCTGCCTCCCACTTA
TTGGAAGTATTTAATGACTCTCAGCTGAAAGAAGATTGAATGAGTAAGTT
TTGCTCTGCTTCTACTTAATGTTCCCAGTATGTAAGCAACTCTCTATTAA
TAAAAAAGTTATTCCTAGTAGGGGGAAATAATGTAGCTCAGCAAACAGAG
AGGGGCTTAAGAAAACCATCTTGAGCTATCGTAGTTTGGATAGCCTTGCT
TTTGACAGACTTGGNCAGCTGAATCAACGAGTCTGTCAGGAATCCTGTTT
GGATTAGCACTCTGTGAAGCATATTATAGATGATCCTTTTTCTTCCCCAA
AACTTGTTTTGTAATCTTAATGCGGTTGGTATTTATAGTTGGGAGAATTT
TCCACACCCTCCAATATTTCTCAATCTTTCAAATACATTCCCTGTAACAT
ATTTTTTTTTATATCCCCCTTCTATCCTCTGAGTTTTTATTTTCTCCTCT
TGCATTTATAATTTTTATCACTTCATTCATTTTTTTGTCTCTTTCCTTTC
CTACTTTCATATTTTCCTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_m17.g1 MSMg01no456_m17.g1 CHROMAT_FILE:
MSMg01no456_m17.g1 PHD_FILE: MSMg01no456_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:44 2005
         (415 letters)



>mm_chr7_99284099_99284912
          Length = 814

 Score =  772 bits (399), Expect = 0.0
 Identities = 410/414 (99%), Gaps = 1/414 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttggtctggttttgcatacacttgagtcagtatccaagttctcttctgtttttacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 catttggtctggttttgcatacacttgagtcagtatccaagttctcttctgtttttacag 554

                                                                       
Query: 61  catgcacagcagcttctgtccctcatcagtgaggtctcatttgactgactgtaggctcat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 553 catgcacagcagcttctgtccctcatcagtgcggtctcatttgactgactgtaggctcat 494

                                                                       
Query: 121 cagggcagtggccatgtctgttctacctctgatatccagggctgcctcccacttattgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cagggcagtggccatgtctgttctacctctgatatccagggctgcctcccacttattgga 434

                                                                       
Query: 181 agtatttaatgactctcagctgaaagaagattgaatgagtaagttttgctctgcttctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agtatttaatgactctcagctgaaagaagattgaatgagtaagttttgctctgcttctac 374

                                                                       
Query: 241 ttaatgttcccagtatgtaagcaactctctattaataaaaaagttattcctagtaggggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 373 ttaatgttcccagtatgtaagcaactctctattaataaaaaagttattcctagta-gggg 315

                                                                       
Query: 301 aaataatgtagctcagcaaacagagaggggcttaagaaaaccatcttgagctatcgtagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 314 aaataatgtagctcagcaaacagagaggggcttaagaaaaccatcttgagctaacgtagt 255

                                                                 
Query: 361 ttggatagccttgcttttgacagacttggncagctgaatcaacgagtctgtcag 414
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 254 ttggatagccttgcttttgacagacttggccagctgaatcaacgagtctgtcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 814
Length adjustment: 9
Effective length of query: 406
Effective length of database: 805
Effective search space:   326830
Effective search space used:   326830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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