BAC Information

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BAC

Clone NameMSMg01-457B23
Chromosome7 (Build37)
Map Location 142,202,714 - 142,396,153
singlet/doubletdoublet
Overlap geneDock1
Upstream geneAdam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750, B830028B13Rik, EG668693
Downstream geneLOC100043254, Foxi2, Clrn3, Ptpre, Mki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457B23.T7 (MSMg01no457_b23.b1)MSMg01-457B23.TJ (MSMg01no457_b23.g1)
ACCAG543263AG543264
length778780
length of high quality
(start - end)		431 (49 - 479)391 (81 - 471)
definitionCHROMAT_FILE: MSMg01no457_b23.b1 PHD_FILE: MSMg01no457_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:12 2005CHROMAT_FILE: MSMg01no457_b23.g1 PHD_FILE: MSMg01no457_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,202,714 - 142,203,141)(142,395,763 - 142,396,153)
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTTTGCCCTCCAGAAAAGGACCAGGCTGTCAGCAGCAGTGG
GTAGCAGTTTAGACTCTTCCTCCAAAAGTCCCCAAGCACAGCCCTTGCCA
CCTACAGCTGGTTCCTTGCCACTCTCCCTAGGGTTCATGGGATTAAGGGA
TCGGGAATCTGCTTTATTTCTTCAGACTGATTTTGCTGACTCACCAATAT
TAGTAATCACTGGGAGGAAGGGGTACCAATCAGCTACCAGCCTGCAGGTG
ATATGGAGGTGGAGGATTCCGAGTAAATGGATAAGTGGGTAGGTATCTTT
ACCTTTGGTATTAAACCTATGACATTAGGTAGGTGCAGAGAATATAGTGT
TGATCATCTAGGAGCTGCTCTTATGTAGTTTGCTCATATGTTACAGTCTG
CCATGTCTTCCTGGAACTGTGAAGTGGATTGAAACCTGCCAGAAACCATA
ATGGAAAGGGATTGCTCTATTTCTTCAAGATGTCTCTCCATCTAAAGAAT
CCATATTCTATACAGATGTCTACTAGAATCCTTTGAACTGCTAGGCGGAG
GTATTTGGTGTTGTTTTCTGGGGGCAAAAAGCTTTTCCCTCATTTAATGT
ATCTTTCCGGCATTTTCTTTTATTCTCCTCCCTTTCTAATTACCTTTATG
TACTTCCTCTCCTATCGCTTCTCCATTATGTTCCTGCTCCACATTTAAGT
CTTCTTTTTCCTTTTCACTATCTTTTTA

NNNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCCTAATGGCCAGATGCA
ATGGACCATGGGACAGAAAGGGTGGTAATATTACTGTAATTTATTACACG
TAGAGGTTAGTGAGAAGTGCGTATGGTCATCTGTAAGGGTGCCAGGAAAC
AGATGCTAAAATCGCATATCCTCTTCTGACACAAAATTTGAGTAGCCAGA
GACTAGAAATACACTTGCTAAAATTAAGAGAATCCGTTAGAAAAATCTAG
CAAGCATCACACTTGGTAATAAATCATTTGACATTTCCATTAAAGCCAGA
TTGGCAAGCTGCCCAAAAGAGGCAGGACTTGGCACCATAGGTACATGCTT
CTTTGNAGGGGGGCTCTGGAATCTTTTCCTCTACCTTCTAATCCTGGGCT
GGCCTTGACATTGGAATGCAGAGAAAGTATATGCCCCTCCCAACTAATGT
CACTGGAGATGCCACAGTCTCTGTTCTTGCTGAAGTACTGGCTGAACAGT
ATTCCTGGACAGGCCCCAATTGGAGGCCATGCTTCCCGTATTATCTCTAA
TGTTTTTTAGTCGGGTCTCCCTTTTGTTTATTTGTGGTTGGCCATTTTTA
TAATTTTTGGTTCCTCACCCCGGTTTTTGTGTGGGGCTATTTTGAGGGAA
ACCTCCGGCCGTTTAATTTTTTTTTAACTTGCTTCTCCACTTCGTTTCGT
TTTATTATTTTTGAAATTCTTTTCTTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_b23.b1 MSMg01no457_b23.b1 CHROMAT_FILE:
MSMg01no457_b23.b1 PHD_FILE: MSMg01no457_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:12 2005
         (431 letters)



>mm_chr7_142202511_142203341
          Length = 831

 Score =  774 bits (400), Expect = 0.0
 Identities = 421/428 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctttgccctccagaaaaggaccaggctgtcagcagcagtgggtagcagttta 63
           ||||| |||||||||||  ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 204 ggaatcccctttgccctaaagaaaaggaccaggctgccagcagcagtgggtagcagttta 263

                                                                       
Query: 64  gactcttcctccaaaagtccccaagcacagcccttgccacctacagctggttccttgcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gactcttcctccaaaagtccccaagcacagcccttgccacctacagctggttccttgcca 323

                                                                       
Query: 124 ctctccctagggttcatgggattaagggatcgggaatctgctttatttcttcagactgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctccctagggttcatgggattaagggatcgggaatctgctttatttcttcagactgat 383

                                                                       
Query: 184 tttgctgactcaccaatattagtaatcactgggaggaaggggtaccaatcagctaccagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgctgactcaccaatattagtaatcactgggaggaaggggtaccaatcagctaccagc 443

                                                                       
Query: 244 ctgcaggtgatatggaggtggaggattccgagtaaatggataagtgggtaggtatcttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgcaggtgatatggaggtggaggattccgagtaaatggataagtgggtaggtatcttta 503

                                                                       
Query: 304 cctttggtattaaacctatgacattaggtaggtgcagagaatatagtgttgatcatctag 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 cctttggtattaaacctatgacattaggtaggtgcagagaatatagtgttgatcttctag 563

                                                                       
Query: 364 gagctgctcttatgtagtttgctcatatgttacagtctgccatgtcttcctggaactgtg 423
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 564 gagctgctcttatgtagtttgctcatatgttacagtctggcatgtcttcctggtactgtg 623

                   
Query: 424 aagtggat 431
           ||||||||
Sbjct: 624 aagtggat 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no457_b23.g1 MSMg01no457_b23.g1 CHROMAT_FILE:
MSMg01no457_b23.g1 PHD_FILE: MSMg01no457_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:12 2005
         (391 letters)



>mm_chr7_142395563_142396353
          Length = 791

 Score =  681 bits (352), Expect = 0.0
 Identities = 381/391 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcctaatggccagatgcaatggaccatgggacagaaagggtggtaatattactgtaat 60
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct: 591 atgcctaatggccagatgcagtggaccatgggacagaaagggtgggaatattattgtaat 532

                                                                       
Query: 61  ttattacacgtagaggttagtgagaagtgcgtatggtcatctgtaagggtgccaggaaac 120
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgattacatgtagaggttagtgagaagtgcgtatggtcatctgtaagggtgccaggaaac 472

                                                                       
Query: 121 agatgctaaaatcgcatatcctcttctgacacaaaatttgagtagccagagactagaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agatgctaaaatcgcatatcctcttctgacacaaaatttgagtagccagagactagaaat 412

                                                                       
Query: 181 acacttgctaaaattaagagaatccgttagaaaaatctagcaagcatcacacttggtaat 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 411 acacttgctaaaattaagagaatccattagaaaaatctagcaagcatcacacttggtaat 352

                                                                       
Query: 241 aaatcatttgacatttccattaaagccagattggcaagctgcccaaaagaggcaggactt 300
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 351 aaatcatttgacattcccattaaagtcagattggcaagctgcccaaaagaggcaggactt 292

                                                                       
Query: 301 ggcaccataggtacatgcttctttgnaggggggctctggaatcttttcctctaccttcta 360
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 291 ggcaccataggtacatgcttctttgtagggtggctctggaatcttttcctctaccttcta 232

                                          
Query: 361 atcctgggctggccttgacattggaatgcag 391
           |||||||||||||||||||||||||||||||
Sbjct: 231 atcctgggctggccttgacattggaatgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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