BAC Information

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BAC

Clone NameMSMg01-457F12
Chromosome7 (Build37)
Map Location 111,165,339 - 111,165,810
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639
Downstream geneOlfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457F12.T7 (MSMg01no457_f12.b1)MSMg01-457F12.TJ (MSMg01no457_f12.g1)
ACCAG543433AG543434
length802742
length of high quality
(start - end)		273 (45 - 317)475 (79 - 553)
definitionCHROMAT_FILE: MSMg01no457_f12.b1 PHD_FILE: MSMg01no457_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:31 2005CHROMAT_FILE: MSMg01no457_f12.g1 PHD_FILE: MSMg01no457_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCTAAAACTTTTATCATGAATGGGTGTTGGATCTTGTC
AAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCAT
CCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTT
AATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCAT
CGATATTCATAAGAGATTTTGTTCTGAAGTTCTCTATCTTTGTTGGGTCT
TTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGG
TAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGAA
TTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGT
CCTGGGCTTATTTTGGCTGGGAGACTATTAATAACTGCCTCTATTTCTTT
AGGTGATATGGGACTGTTTTAAATGTTTAAATTGTATCCTGATTCTACTT
TTGTATCCTGTATTTTGCCCACTATTTTTTGTTTACTTCCTCCCCTGGTT
TTCTCTTTTTTTTTGTAATAAAGCCTCTTTTTTTTAATAAATTCTTTCTC
TGGTTTCTTCTATCTTCCTTTTCTTAATTTTCTGCTTTCTTTTTCCTCCC
TCTTTATTTTTCCTACTTTCTATCATATTTATAGACTCTTACTTTATTGC
CN

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCACTCTGTGATAGAATT
TCATGGCTATGGATCAGTGTGAGACATGACAGACCCATATCATCATCATC
ATCATCATCACCATCATCATCAATCAACATCATCATCACACCACCTGTAT
TACTAAGACGACATTTAGTAATCCCAGCTGAAAGCACCTGGGAAACTATG
GGGCATTTGAATCCATATTACTCTTTCTAAAGAAGACCTATATAACAATG
GGATTTGTTGACTTATTTATTGTCTTATAACTCTCTATCATGGATTAAAT
AACTTGTAGCACATATTTATATACACACAGGCATTAACAGAAATTTTAAA
ATATAGGACTATAATTATAGAACCTGAGAAGCCAATAGAATGATGAATAA
AAACACACTTCTTGTACACATATCAAGTTCAACATCACCTGAGAGGGCTA
TATGAAGGAATTCTTAGATTTACAGNTGGCCAAAGTTCATAATGGTTCCA
CATTGGCCTTAGGCAGCCACTAGTCACAAACCAAAGGTGGACTTTATATA
TCTAAGCAAGAGACCTGGGGCCTTTGTGGTTCTTGTTTTTGCCCCACAAT
GATACCCAATTGTTTTTTTAAAGTGAAAAAGGTGAACTTCCTTCCTTAAG
TGATAATCATCCCGGAACTTTTATAAAAAACACTTTTACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_f12.g1 MSMg01no457_f12.g1 CHROMAT_FILE:
MSMg01no457_f12.g1 PHD_FILE: MSMg01no457_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:31 2005
         (475 letters)



>mm_chr7_111165136_111166010
          Length = 875

 Score =  851 bits (440), Expect = 0.0
 Identities = 465/475 (97%), Gaps = 3/475 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacccactctgtgatagaatttcatggctatggatcagtgtgagacatgacagacccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcacccactctgtgatagaatttcatggctatggatcagtgtgagacatgacagacccat 263

                                                                       
Query: 61  atcatcatcatcatcatcatcaccatcatcatcaatcaacatcatcatcacaccacctgt 120
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcatcatcatcatcatcat---catcatcatcaatcaacatcatcatcacaccacctgt 320

                                                                       
Query: 121 attactaagacgacatttagtaatcccagctgaaagcacctgggaaactatggggcattt 180
           |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 321 attactaagatgacatttagtaattccagctgaaagcacctgggaaactatagggcattt 380

                                                                       
Query: 181 gaatccatattactctttctaaagaagacctatataacaatgggatttgttgacttattt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatccatactactctttctaaagaagacctatataacaatgggatttgttgacttattt 440

                                                                       
Query: 241 attgtcttataactctctatcatggattaaataacttgtagcacatatttatatacacac 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgtcttaaaactctctatcatggattaaataacttgtagcacatatttatatacacac 500

                                                                       
Query: 301 aggcattaacagaaattttaaaatataggactataattatagaacctgagaagccaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcattaacagaaattttaaaatataggactataattatagaacctgagaagccaatag 560

                                                                       
Query: 361 aatgatgaataaaaacacacttcttgtacacatatcaagttcaacatcacctgagagggc 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgatggataaaaacacacttcttgtacacatatcaagttcaacatcacctgagagggc 620

                                                                  
Query: 421 tatatgaaggaattcttagatttacagntggccaaagttcataatggttccacat 475
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 tatatgaaggaattcttagatttacagatggccaaagttcataatggttccacat 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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