BAC Information

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BAC

Clone NameMSMg01-457F22
Chromosome7 (Build37)
Map Location 145,846,791 - 146,016,411
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435235, Tcerg1l, LOC100043290
Downstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457F22.T7 (MSMg01no457_f22.b1)MSMg01-457F22.TJ (MSMg01no457_f22.g1)
ACCAG543453AG543454
length765744
length of high quality
(start - end)		448 (78 - 525)400 (80 - 479)
definitionCHROMAT_FILE: MSMg01no457_f22.b1 PHD_FILE: MSMg01no457_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:33 2005CHROMAT_FILE: MSMg01no457_f22.g1 PHD_FILE: MSMg01no457_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,846,791 - 145,847,238)(146,016,012 - 146,016,411)
sequence
NNGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTTCACTGCCGACTGGACATTTGGCAAACACATGTGCAT
TCACCCAGCTCTGCCAGGCCTGCATGAGCCCCACTAGCTACTAATCAAGG
GTCTTAGACAAACATTGGTTACTGTGAATTGCTGGCACTAATCGCACAGG
CTAGTGTTTGCGCACCAACTCTGTCCCTGTGTCCCTAGAATGCCACATGC
TTACAAATAACATCCCAACTCCTGTGACCTTCATCTCTGTCCAGACAAAT
AGCCTAGGGCCCATTCCTATTTGTTCTTTCTACAATATCCAGAGTAGCAC
TTGTGAGCCTTATGCTTGGTTAACACCAATCACTAGAGTGGTGTGCAGAA
ACCCTGATGCTGGTATCTGAATCCACAGTGAGAAAAGCTTTCAAACCTAT
CCTTGGTCATGTCCTCAAAAGCGGATGTGAGGAAAGGCAGAAGGCAGTCG
GTCATGCAGGGACACTGACTCTCAATTTGCCCTCTATGCAGAGGAATAAT
GTCAACCAATGTTTGTCACTGAGACTCCCAGCATGAGCTTAAACTCTAAA
TTCCCAGGTCCATTGCCCTTGGCCCTTTAACCTAATGGAAAGGGCTGCTG
GGAATCCTATCTGGAAGCAATAAGGTGTCCCCTTGGGGAAAAGGTTTACC
CTTCCCCCCTTTTTTAAGAAAAATATATTTCTTCCCTGGGAAAAAACACA
TGTTTTGGGTTTATA

NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATGAGGCCCGGTGTCCAG
ATCTGCTCTGCTCAGGAGTCCTTGACAATTAGGGGCCACAGGTGGGCAAC
TTGGCAAGAAATAACAACCCCAGCATTTATGTAGCTCTTGACAATTGACA
AAGCCTTTGCACACCCTCGCTTGGTTCCTGGCCAGAGCTGTACGTGGGGA
CCCTTGGCCTGGAGCCCAGGAACTGGGTGGTCAGACCTTGGTGACACCTC
AGCATGTCATGCCCAGCTCCTATGGCCTTGTCTAGCCTCAAGCTGTCACA
CTGAGCTGAGCTTACTCTAGGCCACCTGAAGAATGAGAGGGAGAGCCTTT
TCCCAGGTCATCCCTAGCCTCCCCACTCCTGAGTGCACTGAGGATAACTG
GTTAGACTCCACTGGCAGCATCGAGTTGTTGCCTTCAGATATCAGTAGGA
TGTGGCGATTGGAAAGCTCCACTGGCCACAGAACGTCCAGGCAGGTGGGA
ATGGTTCACGGTAATGATCCTTTTGCATCCCCGAATGAATGTTTAAAGTT
TGGTGGTGGATCTCGGCCCTGGAACATTCTCTTTGGATTTCTTGATGTTT
TATCCCTCTTTTTTTTTTTTTTTTTTCCTTATCTCCCTTCCCCCTCCTTC
CCACTATTTCCCCCTCTCACTTTTTTCTTCCTACCCTATTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_f22.b1 MSMg01no457_f22.b1 CHROMAT_FILE:
MSMg01no457_f22.b1 PHD_FILE: MSMg01no457_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:33 2005
         (448 letters)



>mm_chr7_145846591_145847438
          Length = 848

 Score =  859 bits (444), Expect = 0.0
 Identities = 447/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatttggcaaacacatgtgcattcacccagctctgccaggcctgcatgagccccactag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttggcaaacacatgtgcattcacccagctctgccaggcctgcatgagccccactag 260

                                                                       
Query: 61  ctactaatcaagggtcttagacaaacattggttactgtgaattgctggcactaatcgcac 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ctactaatcaagggtcttagacaaacattggttactgtgaattactggcactaatcgcac 320

                                                                       
Query: 121 aggctagtgtttgcgcaccaactctgtccctgtgtccctagaatgccacatgcttacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctagtgtttgcgcaccaactctgtccctgtgtccctagaatgccacatgcttacaaa 380

                                                                       
Query: 181 taacatcccaactcctgtgaccttcatctctgtccagacaaatagcctagggcccattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacatcccaactcctgtgaccttcatctctgtccagacaaatagcctagggcccattcc 440

                                                                       
Query: 241 tatttgttctttctacaatatccagagtagcacttgtgagccttatgcttggttaacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttgttctttctacaatatccagagtagcacttgtgagccttatgcttggttaacacc 500

                                                                       
Query: 301 aatcactagagtggtgtgcagaaaccctgatgctggtatctgaatccacagtgagaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcactagagtggtgtgcagaaaccctgatgctggtatctgaatccacagtgagaaaag 560

                                                                       
Query: 361 ctttcaaacctatccttggtcatgtcctcaaaagcggatgtgaggaaaggcagaaggcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcaaacctatccttggtcatgtcctcaaaagcggatgtgaggaaaggcagaaggcag 620

                                       
Query: 421 tcggtcatgcagggacactgactctcaa 448
           ||||||||||||||||||||||||||||
Sbjct: 621 tcggtcatgcagggacactgactctcaa 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no457_f22.g1 MSMg01no457_f22.g1 CHROMAT_FILE:
MSMg01no457_f22.g1 PHD_FILE: MSMg01no457_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:33 2005
         (400 letters)



>mm_chr7_146015812_146016611
          Length = 800

 Score =  750 bits (388), Expect = 0.0
 Identities = 397/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaatgaggcccggtgtccagatctgctctgctcaggagtccttgacaattaggggccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctaatgaggcccggtgtccagatctgctctgctcaggagtccttgacaattaggggccac 541

                                                                       
Query: 61  aggtgggcaacttggcaagaaataacaaccccagcatttatgtagctcttgacaattgac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 540 aggtgggcaacttggcaagaaataacaaccccagcatttatgtagctcttgacaattggc 481

                                                                       
Query: 121 aaagcctttgcacaccctcgcttggttcctggccagagctgtacgtggggacccttggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaagcctttgcacaccctcgcttggttcctggccagagctgtacgtggggacccttggcc 421

                                                                       
Query: 181 tggagcccaggaactgggtggtcagaccttggtgacacctcagcatgtcatgcccagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tggagcccaggaactgggtggtcagaccttggtgacacctcagcatgtcatgcccagctc 361

                                                                       
Query: 241 ctatggccttgtctagcctcaagctgtcacactgagctgagcttactctaggccacctga 300
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctatggccttgccgagcctcaagctgtcacactgagctgagcttactctaggccacctga 301

                                                                       
Query: 301 agaatgagagggagagccttttcccaggtcatccctagcctccccactcctgagtgcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agaatgagagggagagccttttcccaggtcatccctagcctccccactcctgagtgcact 241

                                                   
Query: 361 gaggataactggttagactccactggcagcatcgagttgt 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaggataactggttagactccactggcagcatcgagttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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