Query= MSMg01no460_k21.b1 MSMg01no460_k21.b1 CHROMAT_FILE:
MSMg01no460_k21.b1 PHD_FILE: MSMg01no460_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:00 2005
(522 letters)
>mm_chr7_107447887_107448811
Length = 925
Score = 934 bits (483), Expect = 0.0
Identities = 515/527 (97%), Gaps = 6/527 (1%)
Strand = Plus / Minus
Query: 1 atactgacgtttcattttagtgataaaagcaataacaatcacactgtaaaatatatgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atactgacgtttcattttagtgataaaagcaataacaatcacactgtaaaatatatgaag 527
Query: 61 aatgagataaaaaaaatcactccactgaagcccagtcactcaggcgcttttgac--tgcg 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 526 aatgagataaaaaaaatcactccactgaagcccagtcactcaggcgcttttgactatgtg 467
Query: 119 ctctcttctttactgtgaatgattctgttctatacttaacagaggagtggctcagtaacc 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctctcttcattactgtgaatgattctgttctatacttaacagaggagtggctcagtaacc 407
Query: 179 t--gagtattccgtactcgccagatgtaaagtcgcagcttttaaaacatgcaccaatctc 236
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 taagagtattccgtactcgccagatgtaaagtcgcagcttttaaaacatgcaccaatctc 347
Query: 237 ttacttagtcttctctgacctctacagggagggaaactgaggctcaggcagataaagtca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttacttagtcttctctgacctctacagggagggaaactgaggctcaggcagataaagtca 287
Query: 297 ggggctcaaatttccacataatttcaactttgtctgtgtgatgccacggtctatggctta 356
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 286 ggggctcaaatttccacagaatttcaactttgtctgtgtgatcccacggtctatggctta 227
Query: 357 acaactgatttaatttgttactacacgttttttt-attaaaaatatattttatatggtag 415
||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 226 acaactgatataatt-gttactacacgttttttttattaaaaatatattttatatggtag 168
Query: 416 tcaaaggtccacagtgaagggacgtctaccagatgtactgtagaagcagggggcgtaaat 475
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 167 tcaaaggtccacagtgaagggacatctaccagatgtactgtagaagcagggggcgtaaat 108
Query: 476 catttaaagatgaatcttctgtgttttggtacttgtgcaaatttcaa 522
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 catttaaagatgaatcttctgtgttttggtacttgtgcaaatttcaa 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 925
Length adjustment: 10
Effective length of query: 512
Effective length of database: 915
Effective search space: 468480
Effective search space used: 468480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_k21.g1 MSMg01no460_k21.g1 CHROMAT_FILE:
MSMg01no460_k21.g1 PHD_FILE: MSMg01no460_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:00 2005
(489 letters)
>mm_chr7_107247232_107248125
Length = 894
Score = 884 bits (457), Expect = 0.0
Identities = 484/495 (97%), Gaps = 7/495 (1%)
Strand = Plus / Plus
Query: 1 ttatttaaataaaagatcttttctcaaaaaaaaaaaaaaaaa-gatgcatttaaatggcc 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ttatttaaataaaagatcttttctcaaaaaaaaaaaaaaaaaagatgcatttaaatggcc 260
Query: 60 taaccattactgcctatattcacattgacatgttatttagtgctgtgagtaaccttaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaccattactgcctatattcacattgacatgttatttagtgctgtgagtaaccttaaaa 320
Query: 120 accaacttaagaaaggcaaaatatttatttttgtggtccctggagagacagtaggagtga 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 accaacttaagaaaggcaaaatatttatttttgtggtccctggagagacagtaggagtta 380
Query: 180 ggctcacaccaagcccactgatgccagtatccatc---a--aagtgtaactccacacagg 234
||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 381 ggctcacaccaagcccactgatgccagtatcca-ctgtattaagtgtaactccacacagg 439
Query: 235 cagccactctctcattttaattacccattttcaaaagctccatgagtgattattttattt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagccactctctcattttaattacccattttcaaaagctccatgagtgattattttattt 499
Query: 295 tctttctaaggcaaaaagtaaaagcagaaataatacaaactgccctccaagagctctcaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctttctaaggcaaaaagtaaaagcagaaataatacaaactgccctccaagagctctcaa 559
Query: 355 gtacacccagaaagtctcctgagtggttggttacttcatcaatatgatgggcggcacact 414
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 gtacacccagaaagtctcctgagtggttggtttcttcatcaatatgatgggcggcacact 619
Query: 415 gtgaatttgttaggaagaaggaatgcctggataggcaaaagctagactagtggtctccac 474
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 620 gtgaatttgttaggaagaaggaattcctggataggcaaaagctagactagcggtctccac 679
Query: 475 ctcagcatctgtgtt 489
|||||||||||||||
Sbjct: 680 ctcagcatctgtgtt 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 894
Length adjustment: 10
Effective length of query: 479
Effective length of database: 884
Effective search space: 423436
Effective search space used: 423436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
