BAC Information

Click to search

BAC

Clone NameMSMg01-461F05
Chromosome7 (Build37)
Map Location 85,444,250 - 85,444,421
singlet/doubletsinglet
Overlap geneNtrk3
Upstream geneA330068G13Rik
Downstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461F05.T7 (MSMg01no461_f05.b1)MSMg01-461F05.TJ (MSMg01no461_f05.g1)
ACCAG546475AG546476
length781798
length of high quality
(start - end)
224 (77 - 300)175 (77 - 251)
definitionCHROMAT_FILE: MSMg01no461_f05.b1 PHD_FILE: MSMg01no461_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:53 2005CHROMAT_FILE: MSMg01no461_f05.g1 PHD_FILE: MSMg01no461_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAATCCGC
GGAATTCTCAATGTTCCCCACTTGAATGAATGAAAAACACTTAAGGAAAT
GTTCAACATCGCTATTCATCAGGTAAATGCAAATGAAAACTACTTTCAGA
TTTCGGCTTACACCTGCCAGAATGGTAAGATCAATAAACAATGACAGCTC
ATGCTGGCAAGGATGTGGTGTAAGTGAAACCCTCATCCATTGCTGGTGGG
AGTGCAAACTCATACAACTATGATTAAAATTATCCCGGCAGTCCTTCATG
AAGATAGGAACTGTCCTACTTCTTTAGACACTTGTCCAATATGTTCACTC
CTGCTGTATTCATAACAGCCACAAATGGATAAGAGCCTAGATGCCCATCA
ATGTATGAATGTATTTTTACCTTTGCAGCTAAAAAAATATCATTAAATTA
AATTTGCATATTATTATATAGAAGCTAGAAACTATCAAACTCATAACTCA
TCTTTTGTATACCCCTTCCCATCTTTACCTTTAATACTTATTCGAGTTCT
CTCCCTTTCACGATTAATACCTAACCATGTTTTTTGCTTATATTTTGTCG
CTTTGTTTTTACCCCTATATTTTTTACCCAGCTCCCTTTTCTTCTTTCAT
CCCCCCCATTTTTCTTTTCTTAATCTTTTCACTATCCTACTTCCCTCCCT
TCTTGCAGTGCTTCTATTACTACCCTTTTTTTCCCTACTCTTTTCTTCGT
TCTCTCTCCTCTTCCCGGTCTATTTCCTATT
CTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGAGGACTTTGGTTGTTCATA
TGAGTTAAGTTCTGTATTATCCCATGCATGGCACAGACAGTGGGTGGGAC
TAACCCCTGAGAAGATGGGAGGGAACATGAGTTTGTTAGCATGGAGAGCT
CTTCTTAGGGAGAAGAACACAAGAGGAAAGCATAGAGCTGTGGTTCAGAG
GTTCTGTAGCAAGAACATAAAGGAGGCTTTGCATGGTGGCTTCTATCTTA
CCAGTGAGGTATGAGGCTTTTTCTTGTGCCATGTGTGAGAAGATCTGGTA
AGAGTTGATAAGATACCCTATGTCATTGGAAGACACTATCACTGTATGCC
AGAGATGTGCTCGGTTTGCTCCTGCCCTTCAATACTGGTCCGGATGAGCT
TGATATATAATGTCCCACCTCCTGTCGTGACTTTCTCCCTGCTTTCTCTC
GTTTTTCTGTTTCTGTTCTCTCGTCCTCCCTTCCCTTTCATTTCCTCGCT
TTTTCTCCCTCTTCTTTCCCTTTTTTTCTCCTTCCCTTCTTCTCTCTATT
CCTTTTTTCCCCCCCCTCTTTTTTTTCACCTATTCTTTTCTTCTTTCTTG
TTCTTTTTCTTCCCCCCTTTTTTTTTTTCTTTTTCTCCCCCTTCTTTTTC
TTTTTTCTCCCTCTCCCTCTTTTTCACCTTTCCCTCTTTGTTATTTCCTC
CTTCTCTCCTGTTTTTCCTTTTCCCTTCCCTCCTTCTTCTCTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_f05.g1 MSMg01no461_f05.g1 CHROMAT_FILE:
MSMg01no461_f05.g1 PHD_FILE: MSMg01no461_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:53 2005
         (175 letters)



>mm_chr7_85444050_85444621
          Length = 572

 Score =  308 bits (159), Expect = 2e-88
 Identities = 170/175 (97%), Gaps = 3/175 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggaggactttggttgttcatatgagttaagttctgtattatcccatgcatggcacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagggaggactttggttgttcatatgagttaagttctgtattatcccatgcatggcacag 313

                                                                       
Query: 61  acagtgggtgggactaacccctgagaagatgggagggaacatgagtttgttagcatggag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acagttggtgggactaacccctgagaagatgggagggaacatgagtttgttagcatggag 253

                                                                  
Query: 121 agctcttcttagggagaagaacacaagaggaaagcatagagctgtggttcagagg 175
           | ||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 252 aactcttcttagggagaagaacacaagaggaaagcataga---gtggttcagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 572
Length adjustment: 8
Effective length of query: 167
Effective length of database: 564
Effective search space:    94188
Effective search space used:    94188
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)