Query= MSMg01no461_m22.b1 MSMg01no461_m22.b1 CHROMAT_FILE:
MSMg01no461_m22.b1 PHD_FILE: MSMg01no461_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:33 2005
(420 letters)
>mm_chr7_85137991_85138810
Length = 820
Score = 646 bits (334), Expect = 0.0
Identities = 409/466 (87%), Gaps = 51/466 (10%)
Strand = Plus / Plus
Query: 5 gaattcagtctctctctctttggaacctgtttcctatgtttctcaggactacatgtaccc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gaattcagtctctctctttttggaacctgtttcctatgtttctcaggactacatgtaccc 215
Query: 65 catattgcagagtctcctgcactttatttcatactct--actatcagctccaaccatgta 122
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 216 catattgcagagtctcctgcactttatttcatactctttactatcagctccaaccatgta 275
Query: 123 caaaagaagaggatacagaaaaaaaaagatgcattagtgtacaaagaatgctatgaagta 182
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 276 caaaagaagaggatacagaaaaaaaa-gatgcattagtgtacaaagaatgctatgaagta 334
Query: 183 ggacaagagcattgctgcttgctaccgaagaatgcaaggcaaatccctcagagagagaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggacaagagcattgctgcttgctaccgaagaatgcaaggcaaatccctcagagagagaga 394
Query: 243 ga------------------------------------------------agaaaggaag 254
|| ||||||||||
Sbjct: 395 gagagagagagagagagagagagagagagagagagagagagagagagagaagaaaggaag 454
Query: 255 gaaggtatacagagagaagagagaataaggaagaaagataaaagaaagagttcatagtga 314
||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct: 455 gaaggtatacagagagaagagagaaaaagtaagaaagataaaacaaagagttcatagtga 514
Query: 315 agaagctaaaaatctagcatcaagacgtagacactgctacaattttccatttacccgtgg 374
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agaagctaaaaacctagcatcaagacgtagacactgctacaattttccatttacccgtgg 574
Query: 375 catattattaagtctttgtaaatcttagttttgtggaccattcagt 420
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 575 catattattaattctttgtaaatcttagttttgtggaccattcagt 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_m22.g1 MSMg01no461_m22.g1 CHROMAT_FILE:
MSMg01no461_m22.g1 PHD_FILE: MSMg01no461_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:33 2005
(243 letters)
>mm_chr7_85343526_85344168
Length = 643
Score = 470 bits (243), Expect = e-137
Identities = 243/243 (100%)
Strand = Plus / Minus
Query: 1 aggttgcctagagcatggccatgttgggatccagtgcatggagggtacatttatataaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggttgcctagagcatggccatgttgggatccagtgcatggagggtacatttatataaga 384
Query: 61 ggaggatagactttttgttgattctggccatctggtaactctttctgtcactgtctttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggaggatagactttttgttgattctggccatctggtaactctttctgtcactgtctttgc 324
Query: 121 tctttttttaggtgggaggacacaccatgctccccatccgctggatgccccctgaaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctttttttaggtgggaggacacaccatgctccccatccgctggatgccccctgaaagca 264
Query: 181 taatgtaccggaagttcaccacagagagtgatgtctggagcttcggggttattctttggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taatgtaccggaagttcaccacagagagtgatgtctggagcttcggggttattctttggg 204
Query: 241 aga 243
|||
Sbjct: 203 aga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
