Query= MSMg01no461_p12.b1 MSMg01no461_p12.b1 CHROMAT_FILE:
MSMg01no461_p12.b1 PHD_FILE: MSMg01no461_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:47 2005
(277 letters)
>mm_chr7_65953157_65953836
Length = 680
Score = 497 bits (257), Expect = e-145
Identities = 274/281 (97%), Gaps = 5/281 (1%)
Strand = Plus / Plus
Query: 1 caggaggaatgcctagtaggggccttatttccacagaaaggtgcaagattggggggg--a 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 caggaggaatgcctagtaggggccttatttccacagaaaggtgcaagattggggggggga 260
Query: 59 gtgtaaatgnct--aactttctgtcatcaggtgtgtgaacttgggctgggaggctatctt 116
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtaaagg-ctcaaactttctgtcatcaggtgtgtgaacttgggctgggaggctatctt 319
Query: 117 ctgattttccttttctctttttattagattggcattatacaactctcatgaaaaaccaga 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgattttccttttctctttttattagattggcattatacaactctcatgaaaaaccaga 379
Query: 177 aagcagggcccagggaagatggctcagtcattaaaagcacttgcttttgaaagcatctct 236
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagcggggcccagggaagatggctcagtcattaaaagcacttgcttttgaaagcatctct 439
Query: 237 cagaggatgggcatttggttcctagaacttatgtactcacg 277
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagaggatgggcatttggttcctagaacttatgtactcacg 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 680
Length adjustment: 9
Effective length of query: 268
Effective length of database: 671
Effective search space: 179828
Effective search space used: 179828
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no461_p12.g1 MSMg01no461_p12.g1 CHROMAT_FILE:
MSMg01no461_p12.g1 PHD_FILE: MSMg01no461_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:47 2005
(514 letters)
>mm_chr7_66186750_66187661
Length = 912
Score = 924 bits (478), Expect = 0.0
Identities = 491/496 (98%), Gaps = 2/496 (0%)
Strand = Plus / Minus
Query: 19 ttagtagtttcagagaatggggaaatggaagaagtgagatactgaaagaagagaatgatg 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ttagtagtttcagagaatggggaaatggaagaagtgagatactgaaagaagagaatgatg 853
Query: 79 ggattttcttcattggtgtaacccatgctcctgtaaagaacttctcaccaatgtccctac 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ggattttcttcattggtgtaacccatgctcctgtaaagaacttctcaccaatgtccctac 793
Query: 139 aagtttcctaatgaaactcattggttgatgaagttatatttggatataatcatttctgtg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aagtttcctaatgaaactcattggttgatgaagttatatttggatataatcatttctgtg 733
Query: 199 gtgtgccactggccttcctaagaaaagttcatacaataaggaaacattattatatcaaat 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gtgtgccactggccttcctaagaaaagttcatacaataaggaaacattattatatcaaat 673
Query: 259 caataggatgttatttagagtttctgtaagctagttttaaaattatttaggaaaaaaaaa 318
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 672 caataggatgttatttagagtttctgtaagcgagttttaaaattatttaggaaaaaaa-- 615
Query: 319 ctagttgaacagtctaaaaatatgtttttaaaaagtctgaatataaaatagcatttgtca 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctagctgaacagtctaaaaatatgtttttaaaaagtctgaatataaaatagcatttgtca 555
Query: 379 acatcaatttggaaatggcttgatttcaagctactataataaccacaatgacctaataaa 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acatcaatttggaaatggcttgatttcaagctactataataaccacaatgacctaataaa 495
Query: 439 gcatgcatatttagcagaacaggggagcatgtcctgaatgtataaatatgatgagatgag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 494 gcatgcatatttagcagaacaggggagcatgtcctgaatgtataaatatgatgaggtgag 435
Query: 499 ttaaagagaaatacag 514
||||||||||||||||
Sbjct: 434 ttaaagagaaatacag 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 912
Length adjustment: 10
Effective length of query: 504
Effective length of database: 902
Effective search space: 454608
Effective search space used: 454608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
