Query= MSMg01no462_d20.b1 MSMg01no462_d20.b1 CHROMAT_FILE:
MSMg01no462_d20.b1 PHD_FILE: MSMg01no462_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:11 2005
(490 letters)
>mm_chr7_81668646_81669535
Length = 890
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%)
Strand = Plus / Minus
Query: 1 atcctatcatggtggattcaaagcctcacacttccccttccttgtttggaatctttgagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 atcctatcatggtggattcaaagcctcacacttccccttccttgtttggaatctttgagc 631
Query: 61 tcaactctaggcaggaacccagtggggcgtggcgatgacactgggtctatctatttaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tcaactctaggcaggaacccagtggggcgtggcgatgacactgggtctatctatttaaat 571
Query: 121 gttggccctgtaagtaatcatgagtcccggctggatggcaggtgctggcaagcatctaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gttggccctgtaagtaatcatgagtcccggctggatggcaggtgctggcaagcatctaat 511
Query: 181 tgtactctcaaacttcacatagttgtgtggtcctttggcacctgagactgaggttaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgtactctcaaacttcacatagttgtgtggtcctttggcacctgagactgaggttaacaa 451
Query: 241 ctctatcatccttatgtgtggtggctgaccagggaggtgggaaggagtgtgtcccctgct 300
||||| || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctctaccagccgtaggtgtggtggctgaccagggaggtgggaaggagtgtgtcccctgct 391
Query: 301 ccattctaagctctatggagtggtgaaacctcagtttccctgtgggatctggtctggctt 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccattctaagctctatagagtggtgaaacctcagtttccctgtgggatctggtctggctt 331
Query: 361 ttatggctgtttatggcaaggcaaatggcctgacatgtgcacagaacaggtgtcagagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttatggctgtttatggcaaggcaaatggcctgacatgtgcacagaacaggtgtcagagaa 271
Query: 421 cacttcctgggcttgtgtgagtgctgggccttgggcaggttctaaagtgctgcagatctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cacttcctgggcttgtgtgagtgctgggccttgggcaggttctaaagtgctgcagatctg 211
Query: 481 agatgcgctc 490
||||||||||
Sbjct: 210 agatgcgctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_d20.g1 MSMg01no462_d20.g1 CHROMAT_FILE:
MSMg01no462_d20.g1 PHD_FILE: MSMg01no462_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:11 2005
(502 letters)
>mm_chr7_81518047_81518948
Length = 902
Score = 905 bits (468), Expect = 0.0
Identities = 496/510 (97%), Gaps = 8/510 (1%)
Strand = Plus / Plus
Query: 1 ccatacaagcctccttacgttagaaaaccacttcagactctgcttggagacaggaagcgg 60
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 193 ccatacaagcctccttacgttaaaaaaccacgtcagactctgcttggagacaggaagcgg 252
Query: 61 ggagctggttgtacaaaa--------ctctcatacacgactctgtgggtttgtgggtgcc 112
|||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 253 ggagctggttgtacaaaactgtctggctctcatacaggactctgtgggtttgtgggtgcc 312
Query: 113 tcccatctcaaagtccaggtaggcagcaatcacagcctcttgttatttttgattttaaga 172
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcccatctcaaagtccaggcaggcagcaatcacagcctcttgttatttttgattttaaga 372
Query: 173 agaagaatggctagaaagctttggtgttcaacaggttgcctacaatgaaattcttaaagt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agaagaatggctagaaagctttggtgttcaacaggttgcctacaatgaaattcttaaagt 432
Query: 233 ctagagcaatgtctctcagccaggggtgacttggttcccagacattcagttaaacctgga 292
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctagagcaatggctctcagccaggggtgacttggttcccagacattcagttaaacctgga 492
Query: 293 acaaagagccttgattatgttctaggtttgttgatcttatttcaacctctctcacacaca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acaaagagccttgattatgttctaggtttgttgatcttatttcaacctctctcacacaca 552
Query: 353 tagagtggcacagacagcattttatttttcttagacataaatgccatactgtcgtaccca 412
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tagagtggcacagacaacattttatttttcttagacataaatgccatactgtcgtaccca 612
Query: 413 agctcaccactctcacttgccctggcccatttcctagcctaggacttcaattcgaagcct 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agctcaccactctcacttgccctggcccatttcctagcctaggacttcaattcgaagcct 672
Query: 473 cccaaacctccccttcaaagcttgagtttc 502
||||||||||||||||||||||||||||||
Sbjct: 673 cccaaacctccccttcaaagcttgagtttc 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
