BAC Information

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BAC

Clone NameMSMg01-462M03
Chromosome7 (Build37)
Map Location 73,313,287 - 73,313,646
singlet/doubletsinglet
Overlap geneChsy1
Upstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47
Downstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462M03.T7 (MSMg01no462_m03.b1)MSMg01-462M03.TJ (MSMg01no462_m03.g1)
ACCAG547570AG547571
length752754
length of high quality
(start - end)
365 (122 - 486)100 (70 - 169)
definitionCHROMAT_FILE: MSMg01no462_m03.b1 PHD_FILE: MSMg01no462_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:52 2005CHROMAT_FILE: MSMg01no462_m03.g1 PHD_FILE: MSMg01no462_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTCTAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCG
CGGAATTCTGAACCCATTTCCATGTTCTCTCTCTAGAATGATTATTACAT
TXXXXXXXXXXXXXXXXXXXXAGATTCTCCACTATCTTGAACACTATTCC
CCAAGTTTAATTCCAAGGCCTTTCTCTGCTCTCTCTTTCTATATTAAACG
TCTCAGGATGGACACACACACACACACACACACACACACACACCAAGTCT
CTTTGAGGGATGACCAGTGGGGTCTGTGCTAGATGACAGGGACAATGGAG
GAGTGAGGTCCTACTACAGTTTTTTAGGTCACTGCTCTGCGCTGTCAGAC
ACGCACCTCACTCCTCCTTAGGCACTCAGTTACTTTCTTACAGTTTTGAT
TGTGAGCATAGCCTTCAATGGCTGCACCATCTCTCCAGCCCTTGGTTAAT
TTTTCGGGAAAGTAAACGTGAGTTATGCGATTTAGAATCAAGAAGTGACT
ACTGACTAGAGGAAAAATAGCCTATAGATAATCATTTACCTTCAAAAATA
AATATTGCAAGTGATGATCTTTAGTGTTGAAATCTATTTTTGTTAACTGC
CAACCCTATTTTAGTCACTGCTCTTGAATGACTTCCCCCGGTTTTCTCTT
TATAAATGTGTGGCCCACCCCCCGTGTTAACGACTTACTCGCCTCATATA
TGGGTTCGTTCGTATCTTCGGTGTTCCCAACACCCCTGTCATATTCCCTG
CG
CCAAGGGCAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGCANTGAATAATAATCGGTTTGTTTCTGC
GGCTGGATTTGAACTACGGACATTCTTTTTATTTATTTATATTTGTANAC
AAGTTTGTTCTACAATTTTTCANTTCCTGGTTGTTCTGTTGGAATTTGCT
ATGNACCATTCTGGTTTTCACAACATTTAACNTTCCGTCTGCTTTTTAAC
TTCTCGTTTTTCTACCCTTCCCCNNNTTTNNNNTNATAAATTTTTTCGGT
NNCCTTTTTCTTTTTTNNNNNNNNNNNNNNNNNAATTTTTGGGGCTGGGC
GGGGAGGGGGGAGGGGGCGGAGCGGGGAGGGCGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNTNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNTTTTTTTTTTTTTTTTG
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_m03.b1 MSMg01no462_m03.b1 CHROMAT_FILE:
MSMg01no462_m03.b1 PHD_FILE: MSMg01no462_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:52 2005
         (365 letters)



>mm_chr7_73313091_73313855
          Length = 765

 Score =  580 bits (300), Expect = e-170
 Identities = 347/370 (93%), Gaps = 15/370 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattctccactatcttgaacactattccccaagtttaattccaaggcctttctctgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agattctccactatcttgaacactattccccaagtttaattccaaggcctttctctgctc 256

                                                                       
Query: 61  tctctttctatattaaacgtctcaggatggacacacacacacacacacacacacacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctctttctatattaaacgtctcaggatggacacacacacacacacacacacacacacac 316

                                                                       
Query: 121 ac----caagtctctttgagggatgaccagtggggtctgtgctagatgacagggacaatg 176
           ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acacaccaagtctctttgagggatgaccagtggggtctgtgctagatgacagggacaatg 376

                                                                       
Query: 177 gaggagtgaggtcctactacagttttttaggtcactgct-ctgcgctgtcagacacgcac 235
           |||||||||||||||||||||||||   || |||||| | |||||  ||||||| |||||
Sbjct: 377 gaggagtgaggtcctactacagtttcaaagctcactg-tgctgcggggtcagacgcgcac 435

                                                                       
Query: 236 ctcactcctccttaggcactcagttactttcttacagttttgattgtgagcatagccttc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctcactcctccttaggcactcagttactttcttacagttttgattgtgagcatagccttc 495

                                                                       
Query: 296 aatggctgcaccatctctccagcccttggttaatttttcgggaaagtaaacgtgagttat 355
           |         |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 496 a---------ccatctctccagccctcggttaatttttcgggaaagtaaacgtgagttat 546

                     
Query: 356 gcgatttaga 365
           ||||||||||
Sbjct: 547 gcgatttaga 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)