BAC Information

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BAC

Clone NameMSMg01-464D11
Chromosome7 (Build37)
Map Location 125,417,240 - 125,417,478
singlet/doubletsinglet
Overlap geneLOC100043339
Upstream geneXylt1, LOC669758, Rps15a, Arl6ip1, 2610207I05Rik
Downstream geneSyt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464D11.T7 (MSMg01no464_d11.b1)MSMg01-464D11.TJ (MSMg01no464_d11.g1)
ACCAG548684AG548685
length835751
length of high quality
(start - end)
---239 (75 - 313)
definitionCHROMAT_FILE: MSMg01no464_d11.b1 PHD_FILE: MSMg01no464_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:54 2005CHROMAT_FILE: MSMg01no464_d11.g1 PHD_FILE: MSMg01no464_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCATAAGACCCTGTCACGGNAAAAGGAGNGGAACTACTTTAGAGGGG
GGGGGNAANNNNNGGTTGTCAAAAAAACGGGAGAAAAGAAAGCCACAGGA
AACCAGCAGCCACAACCAATGTATACGCAGAGAAGCGGGTAGCAAACCCA
CTAAAATCAGGGACTAGACCAGGCTGCCCACTTTCTCCCTACCTTTTCAA
CATAGCACCTGCAGCATTAGCCAGAGCAATTCGACAACCAAAGGAGATCT
AGGTTGTACAAACTTGGAACAGAGGATGTCCAATTATCACTCCTCGTATA
TGATACACCAGTAGATACTATTTGTTTTTTCACAATTCTACCAGAGAACC
CACTAATCCCGATAAACAGTCTTCGTTGCCCTCTCCTGGATATAGATATA
AACTCAATATAAGTCAATGGCCTTTTCCTCTCCACTATAGAATAAACAGG
CTTAAGACTAGAAATTTACGTGAATTTTTCCAGACCTCTCAATATTCCGC
CGTACACACACCAATAACATCTTTGACCGCGCCCTCCAATTTATACGCCC
CTTAACCGACACCGCACCGACATACCCCGCCCGTGTTCCTCTGACCGATA
TTAAACTACCCGTCCCGCCCCCGTGATTGACGCCAATTCAACTCTCTATT
CAACCGTGGCCCTGAGTTTGTGATTCGTCCCCTGGGCAAAAGACGGGCTA
ATTTATTGTTCTTCCCGACCCTATAATCAGTAAACACAACTGAGAACTCG
CCATAACCTATAAGACTAGCACTTTAAATGCCCATCATGCGTATTTTACT
CCCGCGTACTTTCTTGCATGTCCCGTTTCTTATTG
TCTCGATGCTGTGGGTAGGCTGGAGGCCGCCTGTTCAAAAAATTTAGGTG
AACTATAGAATGTCAAAAGAAATTCCAGGGGTCTAAGGAGATAGCTTGGC
TGGTAAGAGCAATTGCTGTACAAGAGAGAGTATCTAAATTTAAAAACCTG
TAAAATAGAGCTGAACTTGGCCTTAGTATACCTGTGACCCCAGGGCTTCT
GGAGTTAGAGACAGAAAGATAATTGAGGCTTACTGTCTACCAGCCTATCT
CTAAGTTCAATGAGAGACCCCATCTTAAAAGATGAGGTGGAGAGTGATAC
AGACTACCCAGTGTCCTTTTGGCCTCTGCACATGCATGCACACATGCAGG
CATGCATATTTATATTCTGTTTTGACCATCCTTTTTCTTTTCAGCTTTCT
AATTTATCAGGCTCTGGTGCTCTCACAGACCTTGGGCAGGGCACTTTATT
TCCCTGAATATGATGTCCCTCATCAGGAAACTCAAGGAGTTCAATACAGA
GTATGGTTCCTGATACTCCAGCTCCAGATAAAGGGCACAGTGATCCATCT
ATCACCTTCCCCATCAGACAACAGGCACCAGCGTTCTGAACAAATATGTC
ATAAAATAATGGCTCCGACTGCCTACGATCCTATCACAATGATCTTCTCC
CTTTGTATCCCAAAACGGCTATCTTTTTTCTTTAGCAATGTTTTCCTTAA
TTCCTTTTTTTCTTACCGCTTCTCTTACATACTAACTCTTCTGTCTTCTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_d11.g1 MSMg01no464_d11.g1 CHROMAT_FILE:
MSMg01no464_d11.g1 PHD_FILE: MSMg01no464_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:54 2005
         (239 letters)



>mm_chr7_125417178_125417816
          Length = 639

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggggtctaaggagatagcttggctggtaagagcaattgctgtacaagagagagtatc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 301 ccaggggtctaaggagatagcttggctggtaagagcaattgctgcacaagagagagtatc 242

                                                                       
Query: 61  taaatttaaaaacctgtaaaatagagctgaacttggccttagtatacctgtgaccccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaatttaaaaacctgtaaaatagagctgaacttggccttagtatacctgtgaccccagg 182

                                                                       
Query: 121 gcttctggagttagagacagaaagataattgaggcttactgtctaccagcctatctctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 181 gcttctggagttagagacagaaagataattgaggcttactgtctaccagcctagctctaa 122

                                                                      
Query: 181 gttcaatgagagaccccatcttaaaagatgaggtggagagtgatacagactacccagtg 239
           ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 121 gttcaatgagagaccccgtcttaaaggatgaggtggagagtgatacagactacccagtg 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)