BAC Information

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BAC

Clone NameMSMg01-464F15
Chromosome7 (Build37)
Map Location 29,675,580 - 29,676,054
singlet/doubletsinglet
Overlap geneCapn12
Upstream gene1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7
Downstream geneActn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464F15.T7 (MSMg01no464_f15.b1)MSMg01-464F15.TJ (MSMg01no464_f15.g1)
ACCAG548787AG548788
length768751
length of high quality
(start - end)
139 (337 - 475)477 (79 - 555)
definitionCHROMAT_FILE: MSMg01no464_f15.b1 PHD_FILE: MSMg01no464_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:05 2005CHROMAT_FILE: MSMg01no464_f15.g1 PHD_FILE: MSMg01no464_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATTCCTCCTGTCACTAAANGAGGNACTATTGCGNTACCCGCCGNGGA
ANNCNNAANGTTTCGANCACCAGACANGCAGANAGGNNNCANTCAGGCAN
CAACATAACGCAATTATTCGCCCCACTGGACACCCCTTAATAAAATAATA
TATTATAAATAAGTTTCTTTATATAGAAATATGGATAAAGCAAGGCTATG
CACTAACTCATTGATGAACTAGTGTGTCCAGAGCAGAGCACAATAGCTCT
TGCTGATAGTCCCAACTATTTGGAAGGTAACGTAAGAAGCTCATCTGAGC
CCAGGAGCCTGGTTTTTCTCTTTTCACAAAGCAAACATACTTCTTTCCCC
TCTACCTTTCTGTTCCCCTGTCCTCTCCTCCTCTCCCACCCTCTCCCCCT
CTCCCTCTTATCCTTGGCTGGCCATGAACTTGCAGTAGGGAAGGCTGACC
TGTTCCTTGTGCTCTCACCTCCCAGGAATTACCAGCGTATGCCCATGTTC
CCTTCATGGGTGCCGGGGAACAAACCCGATACTTCATACGTGCTAAACCC
ATATTACCAACTGAGCTACATTTCCAGCCATGACCCCCCCATATTCCCAC
ATCACGCTATTTCACCCCCCCCTTTATTTACATATCCGATACAAATTTTT
TATTTTTTTTTCTCCCCCCCCTTTCTCTTCCTTTACCCCTCTCCCCTTTC
ACCCATCCTGCCAAAAAAACTACCTTATACTTTTCCACCCCTCTTTTCAT
CATCCCCGTTTCCTTTCN
TCATGCTGTGGGTAGGCCGGGGGCGCCTGGTTCCAAAATTTAGGNGACCT
ATAGAAGTAACGAAGAAATCCAGGNCCCAGCTCAGCTTCTTCCTTGCCAG
GTGACCAACCACAGGCCTGTCACCTCCCCTTCGAGGAGCCTCTGCTTAGC
TACTAATGGGTAGTCCTTCAAGGGAGGAGCTCAAGGGTCCCAGAACTGAT
CATAGTGATAACTCCCTGCTACTGACTCTTCCCTAACCTTCGTGGGTAGA
TGGATTTGAACTTGTCCCCAACAGCCTGGGAGCTTGTCCCCTTCTCACAG
GTGTAGAGTGGTTTTTTTCCAGAAGCCACCAGAGCTGAGAGGCCATCTCT
TAGCTACTTCAAGGTGCAAGAGCATCACTCTGGGGCCGGACTTGTGATAC
TGACTCCCACCTGCCTCTCCACCTTCCAGGCCACATTTGACAAGTTTGAT
GAAGATGCCTCTGGGACAATGAACTCCTGTGAACTGAGGCTGGCACTGAC
TGCTGCAGGTGTGGCTGAGGACCTGGGATGGCTGTAGGGACAGCAACCCA
TCCTCTTATTCTTGTCTGCATCCCTTCAGCTGTGGGCATCCCCAATAGGC
TGTCCACAAGTCCCAGAGCCTATTTCCTTCCCTGGAGGCTCTGACTGCTT
ATCTGTGGGATGGCATATGTGGATTATGGTTGGAGTCCCCTATATGCCAT
GAAACCCTCTTGATACCCTACTGTTCTCTATGTAGTCTATTGAGCTTTAC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_f15.g1 MSMg01no464_f15.g1 CHROMAT_FILE:
MSMg01no464_f15.g1 PHD_FILE: MSMg01no464_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:05 2005
         (477 letters)



>mm_chr7_29675380_29676254
          Length = 875

 Score =  824 bits (426), Expect = 0.0
 Identities = 464/484 (95%), Gaps = 16/484 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctcagcttcttccttgccaggtgaccaaccacaggcctgtcacctccccttcgaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctcagcttcttccttgccaggtgaccaaccacaggcctgtcacctccccttcgaggag 260

                                                                       
Query: 61  cctctgcttagctactaatgggtagtccttcaa-gggaggagctcaagggtcccagaact 119
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 261 cctctgcttagctactaatgggtactccttcaaggggaggagctcaagggtcccagaact 320

                                                                       
Query: 120 gatcatagtgataactccctgctactgactcttccctaaccttcgtgggtagatggattt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcatagtgataactccctgctactgactcttccctaaccttcgtgggtagatggattt 380

                                                                       
Query: 180 gaacttgtccccaacagcctgggagcttgtccccttctcacaggtgtagagtggtttttt 239
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||      
Sbjct: 381 gaacttgtccccaacagcctgggagcttgtctccttctcacaggtgtagagtgg------ 434

                                                                       
Query: 240 t------ccagaagccaccagagctgagaggccatctcttagctacttcaaggtgcaaga 293
           |      ||||||||||||||||||  |||||| ||||||||||||||||||||||||||
Sbjct: 435 tgcccacccagaagccaccagagct--gaggccgtctcttagctacttcaaggtgcaaga 492

                                                                       
Query: 294 gcatcactctggggccggacttgtgatactgactcccacctgcctctccaccttccaggc 353
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gcatcactctggggctggacttgtgatactgactcccacctgcctctccaccttccaggc 552

                                                                       
Query: 354 cacatttgacaagtttgatgaagatgcctctgggacaatgaactcctgtgaactgaggct 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cacatttgacaagtttgatgaagatgcctctgggacaatgaactcctgtgaactgaggct 612

                                                                       
Query: 414 ggcactgactgctgcaggtgtggctgaggacctgggatggctgtagggacagcaacccat 473
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 613 ggcactgactgctgcaggtgtggctgaggacctgggatg-ctgtagggacagcaacccat 671

               
Query: 474 cctc 477
           ||||
Sbjct: 672 cctc 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 875
Length adjustment: 10
Effective length of query: 467
Effective length of database: 865
Effective search space:   403955
Effective search space used:   403955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)