BAC Information

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BAC

Clone NameMSMg01-466B07
Chromosome7 (Build37)
Map Location 112,766,030 - 112,959,217
singlet/doubletdoublet
Overlap geneTrim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17
Upstream geneOlfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn
Downstream gene9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466B07.T7 (MSMg01no466_b07.b1)MSMg01-466B07.TJ (MSMg01no466_b07.g1)
ACCAG550110AG550111
length734804
length of high quality
(start - end)
502 (52 - 553)208 (85 - 292)
definitionCHROMAT_FILE: MSMg01no466_b07.b1 PHD_FILE: MSMg01no466_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:26 2005CHROMAT_FILE: MSMg01no466_b07.g1 PHD_FILE: MSMg01no466_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,766,030 - 112,766,527)(112,959,010 - 112,959,217)
sequence
NNCCCGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACCCTTCTCCCTTCCACGACTACCTGTGAGTAAGAGATG
AGAAGGGAAACATGAATGAACGCTGAGATTAGTTTGAGCCTCGCTTCCCT
ACTCCCCAAACCCCTGTCTGAGCCAACTCCTTCCCCCACTACCTTTCCCT
GGGCCCCTACCAGCCCCTCCATTCACCCTTCATTTAACTCTGCCCTTAGC
CTTCATTTGGCTCTGTGCTTGGCCCTCCTACCAACACGAAAGACGAGTTC
GTCTTCAATTGGATTGTCCTTCCGTTTGCCACCAGTGCTGTACATGGAGC
TCGGCCTACGAACTGCCTTCTGGCGCACATGACTGCCAGGACCACCGGGA
GACTTGACCCGGCGCTTCACATCATCTGGGGAAGGTGGCAGGTCCCCAGG
TCGAAGGGCACGCACACGAAAAGGGCTGCCACGCACCGGCTGTCCATAGA
GCAGCACTGAGAGGAGCAGGTCACCTTCTGTGCGTGCAGTGTACACCAGC
TCGTATGTGCCATTTTTGTGGTCCACCACCGGTACTGCAAGGCGCACACC
ATCGGGGCCAGTGATCTCTTGCCACAGCTCTGCGCTGCCTGTGCGCACCA
ACCGCCCATCTTTGGCTTTGGGGGGGAACGTGAAAAAAACAGGTTGGGCC
ACTAATGCCTGGGGCAAGGCCCTTCCCCGGGGCC
CCCCCCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGTGTGGCACTCAGC
TGAACGCGTCACTCCTGCGCAGCAAATGGAAGGCTGGTTGGGGCTCCGAA
GGAAGGAGCGCCCAGAATTAGCTTAGCTGGTGGGATGGTTGGATGAAGGT
AAGACAGAAGAGTAAGGTGGGCGCCTCGGTTCTTGACTCGTCTTGCATCC
ATGTGTTTTGTCCTCACAGCTCATCGATTATGGAAAGCTGGGCGACACCA
ACGAACGAGCCATGCGTATGTTTGTATTTCTGGCTCACAGTGAGAGCTCC
CTACCTGCTAGTGAGTAAGGAATCCTTATAGAACCGGGTATCTGTCACAT
TGAGGGCAGCCCATTCTTGTTATGTGCCCGACTTGCGAACTATCTTATAC
ATGTATTCTTCTTATTTGACCTGGTTAAATTGCTTATTCGCATACTTCTC
CTGTATTTGTGTCTGCGTTTTCTTTCAACCCTCATTTTTACGCTGCTTCT
CTTTTGTTCTCATGTTTATTCCATCTTTGACTCTCGCCCCATCGCTTGAT
GCTTTTATTACTTTTTCGTTTGCCCTGAGTTATTTCTTTCGCAGACCTCT
TCTTTCCTCCCCTATATCCTTTTTGTGTATTTTTCGCTTCTCCTCCGCCC
TTATTATTTCGCGTTTCTCTTTATTCTCTTTTTCTCATTCTTTTATTTTT
TCTTATTTCTCTATGTATATAGCGCTCCTCCTCGTTCATTTTCTTTCTTA
CCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_b07.b1 MSMg01no466_b07.b1 CHROMAT_FILE:
MSMg01no466_b07.b1 PHD_FILE: MSMg01no466_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:26 2005
         (502 letters)



>mm_chr7_112765826_112766727
          Length = 902

 Score =  963 bits (498), Expect = 0.0
 Identities = 498/498 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacccttctcccttccacgactacctgtgagtaagagatgagaagggaaacatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacccttctcccttccacgactacctgtgagtaagagatgagaagggaaacatga 264

                                                                       
Query: 65  atgaacgctgagattagtttgagcctcgcttccctactccccaaacccctgtctgagcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgaacgctgagattagtttgagcctcgcttccctactccccaaacccctgtctgagcca 324

                                                                       
Query: 125 actccttcccccactacctttccctgggcccctaccagcccctccattcacccttcattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actccttcccccactacctttccctgggcccctaccagcccctccattcacccttcattt 384

                                                                       
Query: 185 aactctgcccttagccttcatttggctctgtgcttggccctcctaccaacacgaaagacg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aactctgcccttagccttcatttggctctgtgcttggccctcctaccaacacgaaagacg 444

                                                                       
Query: 245 agttcgtcttcaattggattgtccttccgtttgccaccagtgctgtacatggagctcggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttcgtcttcaattggattgtccttccgtttgccaccagtgctgtacatggagctcggc 504

                                                                       
Query: 305 ctacgaactgccttctggcgcacatgactgccaggaccaccgggagacttgacccggcgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctacgaactgccttctggcgcacatgactgccaggaccaccgggagacttgacccggcgc 564

                                                                       
Query: 365 ttcacatcatctggggaaggtggcaggtccccaggtcgaagggcacgcacacgaaaaggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcacatcatctggggaaggtggcaggtccccaggtcgaagggcacgcacacgaaaaggg 624

                                                                       
Query: 425 ctgccacgcaccggctgtccatagagcagcactgagaggagcaggtcaccttctgtgcgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgccacgcaccggctgtccatagagcagcactgagaggagcaggtcaccttctgtgcgt 684

                             
Query: 485 gcagtgtacaccagctcg 502
           ||||||||||||||||||
Sbjct: 685 gcagtgtacaccagctcg 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no466_b07.g1 MSMg01no466_b07.g1 CHROMAT_FILE:
MSMg01no466_b07.g1 PHD_FILE: MSMg01no466_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:26 2005
         (208 letters)



>mm_chr7_112958810_112959417
          Length = 608

 Score =  402 bits (208), Expect = e-117
 Identities = 208/208 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgtgtggcactcagctgaacgcgtcactcctgcgcagcaaatggaaggctggttggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ccgtgtggcactcagctgaacgcgtcactcctgcgcagcaaatggaaggctggttggggc 349

                                                                       
Query: 61  tccgaaggaaggagcgcccagaattagcttagctggtgggatggttggatgaaggtaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tccgaaggaaggagcgcccagaattagcttagctggtgggatggttggatgaaggtaaga 289

                                                                       
Query: 121 cagaagagtaaggtgggcgcctcggttcttgactcgtcttgcatccatgtgttttgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cagaagagtaaggtgggcgcctcggttcttgactcgtcttgcatccatgtgttttgtcct 229

                                       
Query: 181 cacagctcatcgattatggaaagctggg 208
           ||||||||||||||||||||||||||||
Sbjct: 228 cacagctcatcgattatggaaagctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)