BAC Information

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BAC

Clone NameMSMg01-466D22
Chromosome7 (Build37)
Map Location 146,733,936 - 146,734,353
singlet/doubletsinglet
Overlap geneInpp5a
Upstream geneLOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2
Downstream geneNkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466D22.T7 (MSMg01no466_d22.b1)MSMg01-466D22.TJ (MSMg01no466_d22.g1)
ACCAG550236AG550237
length792772
length of high quality
(start - end)
418 (74 - 491)351 (82 - 432)
definitionCHROMAT_FILE: MSMg01no466_d22.b1 PHD_FILE: MSMg01no466_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:39 2005CHROMAT_FILE: MSMg01no466_d22.g1 PHD_FILE: MSMg01no466_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGATCCG
CGGAATTCAGTACTGTTTACATGTGCCATTTAGTCACAAGTATTTGTCAG
ACACAATTTGACCTGGTGCAGATTTATCCTTACCAGCTCTGTGGTGGCTT
TTACATCTATAAGGATGGCAGTACCTTCTCCATGTGGTGTCCTATGGATT
TAGGACCCTGTTCTCTGCCACAAAGGGCATAGAGCAGCAGTCAAGATGAG
CATCTCTTATATGTGTGCTGACTCCAATTGGGGTGCAGTTTATGTCAGAG
ATTTGTCAGGATATTATCTTCTTGTGATAAATGCAAGTTTTAAAATCACC
TGTTTCCATCTTGGAGCTATCAGTTGAGTGACCTGCCAATAACCCTTATT
TTCTTCTCCATGATAAGATTTGAAACAGTGCCCATAGACACTAGCTGTCA
AGGAATGGTTAGACAATGCTTGTTTGTGCTTTTAAATTCAGGCGGCTAGC
CCGGACTGTGGCATACTATGAGGTCTATGACAAGTTTAATTTTAATTCCC
TAGTGACTGTTTTCCCAGTGGTCTGTTTCTCAATCCTATAGCTTCCTCCA
CTGGTTTTTTTTTTTTCCCTCCACTCTTGTGTATAATTAGCCCTTTTTCG
TTTCTCTTTTGCTTTTCTTTCTTTAACCTCTTTCTCGTCTTCATTTACCT
TTTTTCTCTTTTTATATTTCCTTTTTTCCTCTTTTCTCTCCTTTATTTTT
TTCTCCCTTTTTTTTTTCCCTACAAATATTTTATCCCTCCTT
TATTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTGAAAGCATCGCACA
GTTTTGGTACACTCAGTCCTAAATGGAATGTCTTCATCAAACCTCTCTCC
TCAGGGCTCAGGGAGCTATGCAGAAGAGGAAGTGGAAGAGGGGATGAATG
ACACTAAAGAAGTGGTGTCATCCAGACACAGCAGGACTGATGCATGAACT
CATGGAGACGGTGGCAGCACTCACGGAGCCTGCATAGGGTCAAGCCAGAT
GGGGTCCCAGCACTGAGAGAGGAAAGTGGGCACGAGCTCCCATCTCTAGA
CAAGAAGCTATCTGCAATTGATACCTGCTTCCAAACAAAAAATAGTTGTC
TTTGATGGTGTCTCATAAGGAATAAAAACCACACTTAAGGGCAGGTTTCA
TGCCCAGCAGTAGCTTGTCCAACAAAAAGTGAACTCTATGGGATTTTGGT
GACTTGGTGTCTCATACGCCTTTATTTAAGCTGGTTTTCTTTCTTTTCTT
TCCTTTATTTTTTTTCTTTCTTTTCTTCCCTTCTTTCATATTATCTATAT
CCTCCCTTCATATCCCCTTGCTTATGTGGTGTCTTGTTTTCTTCTCGTGT
TTTATGTACTTTCTTTTTTTTTTTTTTTTTTCTCCTCCCTTTTTTTTTCT
TCTTTGCTCTGCATCTTATTCTTGTTCCTCTTATATCTTATTTTTATCCA
TTATCTATCTAATCTTCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_d22.b1 MSMg01no466_d22.b1 CHROMAT_FILE:
MSMg01no466_d22.b1 PHD_FILE: MSMg01no466_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:39 2005
         (418 letters)



>mm_chr7_146733736_146734553
          Length = 818

 Score =  762 bits (394), Expect = 0.0
 Identities = 412/418 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccatttagtcacaagtatttgtcagacacaatttgacctggtgcagatttatccttac 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tgccatttagtcacaagtatttgtcagacacaattcgacctggtgcagatttatccttac 260

                                                                       
Query: 61  cagctctgtggtggcttttacatctataaggatggcagtaccttctccatgtggtgtcct 120
           ||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct: 261 cagctctgtggtggcttttacatctgtaagtatggcagtgccttctccatgtggtgtcct 320

                                                                       
Query: 121 atggatttaggaccctgttctctgccacaaagggcatagagcagcagtcaagatgagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggatttaggaccctgttctctgccacaaagggcatagagcagcagtcaagatgagcat 380

                                                                       
Query: 181 ctcttatatgtgtgctgactccaattggggtgcagtttatgtcagagatttgtcaggata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttatatgtgtgctgactccaattggggtgcagtttatgtcagagatttgtcaggata 440

                                                                       
Query: 241 ttatcttcttgtgataaatgcaagttttaaaatcacctgtttccatcttggagctatcag 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatcttcatgtgataaatgcaagttttaaaatcacctgtttccatcttggagctatcag 500

                                                                       
Query: 301 ttgagtgacctgccaataacccttattttcttctccatgataagatttgaaacagtgccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgagtgacctgccaataacccttattttcttctccatgataagatttgaaacagtgccc 560

                                                                     
Query: 361 atagacactagctgtcaaggaatggttagacaatgcttgtttgtgcttttaaattcag 418
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagacactagctgccaaggaatggttagacaatgcttgtttgtgcttttaaattcag 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)