BAC Information

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BAC

Clone NameMSMg01-466H13
Chromosome7 (Build37)
Map Location 89,959,566 - 89,959,801
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1
Downstream geneLOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466H13.T7 (MSMg01no466_h13.b1)MSMg01-466H13.TJ (MSMg01no466_h13.g1)
ACCAG550410AG550411
length796758
length of high quality
(start - end)
161 (88 - 248)236 (81 - 316)
definitionCHROMAT_FILE: MSMg01no466_h13.b1 PHD_FILE: MSMg01no466_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:58 2005CHROMAT_FILE: MSMg01no466_h13.g1 PHD_FILE: MSMg01no466_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATTTATATTCGCGGGCGNAAAACGAAACACTATTACAATAAAGAGGG
GGGGAATTCCAGTCTATCTGAAAACATTTGGATGAATTACTCTACTCACT
GCTCGCAAATCTGTTAATATTCTCTATTTCACTGATTTCTTTTTTTATAA
TAAATACAGGAGAATTCCATGGGTTGATAGGCTCTTCTATGTGTTGAACC
TCCAAATGCTCTTGTATCAACTGTTCAAGTTCCTGTATTTTTTCTTTAGT
TAAGGGAATTTGTTCTACTCACACAGCTTTGTTAATCAAACATTTTTAAG
GGAAAGGACGCTGTTTTTTTTTTCATATTGGTCCCCCCCTTATAAATATG
GAAATTCACTCATTCCCTGCTGCGTCTTGTTTTGTGTCTATCTTGACTCC
TGGGTATGGTTTTGGATGATATCTATCAATTCTTTCCCGGAAGCTTCTTC
CTTTTTCCCCCCTTTTTTTATGTAATGCCCTGTTCTTTGATTAACCATTA
ATCTTTTAATCCCTCTCTTGTTGCACGCAATGTCCTACCCTTCCACTTTA
AATTGTTCTTCTCTCCTCCCCTTTTAGTATTTTTTATAGTCTTTAATTTT
ATTCTATCTGTTACATCTCACATTACTGTTTCCGCCCACTATTTTTGCTT
TTCTCCCCATTCCAATTTTTCCTTTATTCTTTCATAATCTTATGTATTTT
TTCTCCGTCTCTTTAATTGTAGTATTTTTTTCACTTCACTCACTATTATC
TTTGGATCGTCATATTTTTCTCTTTTATTCCTGTTCTATTCCGTAC
NCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTTGAAGCAGTTTCATT
ATGAGAAGAGTCCCCTGGGGTGCTGTAAACCCTCTGACCCAGCAGCCTGC
GGCTATGACTGCAGATGCGTGAAAGATGCTTTTGCTCTGTCATTTAGGTA
CAGCTGCCGGGTTCTTGCCCAATGTGAGGGTAAGACACTCCTATGCTCGC
TGTCTGTGGGTGAGGGAGAGATTTGAAGCTGGTTTATTTCTGTCGTAACC
AGTGAGAACCCCCCTATTTTTATTAAGAACAGAAGCAACTGGTTTTTGTT
TCTCCCCAATAAGAGCCCTCCTGCACGCTCCTGCCTCTGGTCCTAACACT
GCCACCCACCTATGCATCTTCTCCCCAAATGCTCAGGACACCTGCACACT
CAGGACGGAAGTGGTGACAGGAAGGTATGGTACACAAATTGCCATGATGA
CTGGAAGAGAAGCAGACCTTGGTGGCACACAGGAATAGTGGATAGGGTCC
AACCAGACCCCCAGCTGGTTCTGAGAATTGCTCCGCCACCATTGCATGTG
TGGTGACGAACCTCTGTTTTGCTTGGCTCTCCTTGGATAATTCCCCCTGT
GGGTCCTGAAATGACCCCACCCGACCCCTATAATCTTTTTTTTCTCTCCG
TTGTATTTCCATTTCTCTTTCCACTTCATATTCCACCCTACTTCTCTTTC
CTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_h13.g1 MSMg01no466_h13.g1 CHROMAT_FILE:
MSMg01no466_h13.g1 PHD_FILE: MSMg01no466_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:58 2005
         (236 letters)



>mm_chr7_89959366_89960001
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccttgaagcagtttcattatgagaagagtcccctggggtgctgtaaaccctctgaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttccttgaagcagtttcattatgagaagagtcccctggggtgctgtaaaccctctgaccc 377

                                                                       
Query: 61  agcagcctgcggctatgactgcagatgcgtgaaagatgcttttgctctgtcatttaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agcagcctgcggctatgactgcagatgcgtgaaagatgcttttgctctgtcatttaggta 317

                                                                       
Query: 121 cagctgccgggttcttgcccaatgtgagggtaagacactcctatgctcgctgtctgtggg 180
           |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct: 316 cagctgccgggttcttgcccaatgtgagggtaagtcactccgatgctcgctgtctgcggg 257

                                                                   
Query: 181 tgagggagagatttgaagctggtttatttctgtcgtaaccagtgagaaccccccta 236
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgagggagagattttaagctggtttatttctgtcgtaaccagtgagaaccccccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)