BAC Information

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BAC

Clone NameMSMg01-467A15
Chromosome7 (Build37)
Map Location 68,869,630 - 68,870,229
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
Downstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467A15.T7 (MSMg01no467_a15.b1)MSMg01-467A15.TJ (MSMg01no467_a15.g1)
ACCAG550845AG550846
length739744
length of high quality
(start - end)
600 (63 - 662)538 (70 - 607)
definitionCHROMAT_FILE: MSMg01no467_a15.b1 PHD_FILE: MSMg01no467_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:46 2005CHROMAT_FILE: MSMg01no467_a15.g1 PHD_FILE: MSMg01no467_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
CCACATAGCGTGGAATTATATGAGACACTCCAGCATTTCATACAAACTAA
GTATGCTTGGAGAAATCCATGGGCAGAATGTGGCACTATAATTCTAAAAG
CTCTCTTATGCTTACAATATTAGATATTACATTTTCTAAGAAATTCTATA
ATCAGAGTTTACAACAGAAGTAATTAGTGAAGGAGACACAGAAATCCTGG
TATTAGTTAGCAAGCAGAAAATTTGCATGGTAAAAGTAACAGTCTTTTTG
GTTCAAAAAGAAACAGAACATCTTTGGCAAATGGCTTGGATCTAGGCAAT
AGAAGCCACAAATAGGAACATCTACAGGATTTCACTGACTTGTATTTCTC
TTGGTCATAGTAGATAGAAGTAGTTAAAAATAGTTTTTCTGCCACTCACT
TTTGGTTTTTCTACTTCCATAAGGAAACTTAGGGAAGAGGCAGGGGGTAA
GAAATGAATCAACAGACTGATAGAGTTCTCCAATATTACAGCAAGTTTTG
ATGTCCATGCCTAGATATGATATTTCTCTCCTGATTGGGCCTGTTTCCAT
TCTCAATTTGAATGCACATTCTCAATCTATTAGAAGAAAGAGAGCAAATA
TATTTGTCTGCAAGGGGAGATATGGTCAATTAGGCTGCTGGCTAAGTTCA
AGGATTTTATTTCTTTATATTGGGTTCTTTTCATTATTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGCCAGAGCAATTCGACAACAAAAGGAGA
TCAAAGAGATACAAATTGAAAAGGAAGAAGTCAAAATATTACTGTTTGCA
GATAATATGATAGTATATATAAGTGACCTAAAAATTCCACCAGATAACTC
CTAATCCTGATAAACAGCTGCAGCACAATAGCTGGATATAAAATTTACTC
AAACAAATTAGTGGCCTTTCTGTACACAAAGGATAAACCAGATGAGAAAG
AAATTAGGGAAATAACACCCTTCACAATAGTCGTAAATAATATAAAATAC
CTTGGTGTTATTCTAACTAAGGAAGTGAAAGATCTGTATGAGAAGATCAT
CAAGTATCTGAAGAAAGAAATTGAAGAAGATCTCCGAAGATGGTAAGATC
TCCCATGCTCATGGATTGGCAGGATTAATATAGTAAAAATGGCTATCCTG
CCTAAAACAATCTACAGATTGAATGCAATCAAAATTTCAACTCAATTCTT
CAATAAGTTAGAAAGGCCAATTTGCAAATTCATCGGGAATAAAAAAACAA
AAAAATCACAAACAAAACAAACAAACAAACAAACTAAAAAACCCTAGTAT
AGCAGAAACTATTCTCAACAATAAAACAATCTCTGGTGGAATCACCATAC
CTGATATTTAATTGTGATTAAAAACTGCCCGATACTGGTACAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_a15.b1 MSMg01no467_a15.b1 CHROMAT_FILE:
MSMg01no467_a15.b1 PHD_FILE: MSMg01no467_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:46 2005
         (600 letters)



>mm_chr7_68869430_68870429
          Length = 1000

 Score = 1145 bits (592), Expect = 0.0
 Identities = 598/600 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattatatgagacactccagcatttcatacaaactaagtatgcttggagaaatccatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaattatatgagacactccagcatttcatacaaactaagtatgcttggagaaatccatgg 741

                                                                       
Query: 61  gcagaatgtggcactataattctaaaagctctcttatgcttacaatattagatattacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcagaatgtggcactataattctaaaagctctcttatgcttacaatattagatattacat 681

                                                                       
Query: 121 tttctaagaaattctataatcagagtttacaacagaagtaattagtgaaggagacacaga 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 680 tttctaagaaattctataatcagagtttacaacagaagcaattagtgaaggagacacaga 621

                                                                       
Query: 181 aatcctggtattagttagcaagcagaaaatttgcatggtaaaagtaacagtctttttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatcctggtattagttagcaagcagaaaatttgcatggtaaaagtaacagtctttttggt 561

                                                                       
Query: 241 tcaaaaagaaacagaacatctttggcaaatggcttggatctaggcaatagaagccacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcaaaaagaaacagaacatctttggcaaatggcttggatctaggcaatagaagccacaaa 501

                                                                       
Query: 301 taggaacatctacaggatttcactgacttgtatttctcttggtcatagtagatagaagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taggaacatctacaggatttcactgacttgtatttctcttggtcatagtagatagaagta 441

                                                                       
Query: 361 gttaaaaatagtttttctgccactcacttttggtttttctacttccataaggaaacttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttaaaaatagtttttctgccactcacttttggtttttctacttccataaggaaacttag 381

                                                                       
Query: 421 ggaagaggcagggggtaagaaatgaatcaacagactgatagagttctccaatattacagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggaagaggcagggggtaagaaatgaatcaacagactgatagagttctccaatattacagc 321

                                                                       
Query: 481 aagttttgatgtccatgcctagatatgatatttctctcctgattgggcctgtttccattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagttttgatgtccatgcctagatatgatatttctctcctgattgggcctgtttccattc 261

                                                                       
Query: 541 tcaatttgaatgcacattctcaatctattagaagaaagagagcaaatatatttgtctgca 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 tcaatttgaatgcacattctcaatctattagaagaaatagagcaaatatatttgtctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)