Query= MSMg01no467_d06.b1 MSMg01no467_d06.b1 CHROMAT_FILE:
MSMg01no467_d06.b1 PHD_FILE: MSMg01no467_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:00 2005
(482 letters)
>mm_chr7_103134986_103135867
Length = 882
Score = 862 bits (446), Expect = 0.0
Identities = 473/482 (98%), Gaps = 1/482 (0%)
Strand = Plus / Plus
Query: 1 acataacgaaaatcttggcacagtgatatgtgtttgcagtctcagccctgagaagcacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acataacgaaaatcttggcacagtgatatgtgtttgcagtctcagccctgagaagcacaa 261
Query: 61 acaggtagatccctgtgcctcactggccaatgagcctcatccactcagtgaactccaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acaggtagatccctgtgcctcactggccaatgagcctcatccactcagtgaactccaggc 321
Query: 121 cagtgacagatcccatctcaaaaacaaagaaagtagatgtcacctgataagtgataccca 180
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 322 cagtgacagattccatctcaaaaacaa-gaaagtagatgtcacctgataagtggtaccca 380
Query: 181 agacacatgcatacactgccccctccccatgcacacagagacatacactaaagcagagat 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 agacacatgcatacactgccccctccccatgcacacacagacatacactaaagcagagat 440
Query: 241 gaacatacatgttttatcttgatgctgaaaagagcctccccgatcatttaatataaactt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacatacatggagtatcttgatgctgaaaagagcctccccgatcatttaatataaactt 500
Query: 301 tattttacaaaagacagaacagagagccagaaagaaagactggtgggccaagctcttccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttacaaaagacagaacagagagccagaaagaaagactggtgggccaagctcttccc 560
Query: 361 atcgtacatagatcttacttgctactctgggactccaggcccttgctggagttttccagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcgtacatagatcttacttgctactctgggactccaggcccttgctggagttttccagg 620
Query: 421 caacctgggatctgctgtaacagctagtcctggggtcttgagtcctgtgaaggcacgaag 480
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 621 caacctgggatctgctgtaacagctagccctggggccttgagtcctgtgaaggcacgaag 680
Query: 481 ca 482
||
Sbjct: 681 ca 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_d06.g1 MSMg01no467_d06.g1 CHROMAT_FILE:
MSMg01no467_d06.g1 PHD_FILE: MSMg01no467_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:00 2005
(443 letters)
>mm_chr7_103314135_103314977
Length = 843
Score = 716 bits (370), Expect = 0.0
Identities = 384/392 (97%), Gaps = 7/392 (1%)
Strand = Plus / Minus
Query: 1 ttccttctgtttgctagtagactgaggggatatttgacagtacctggaggtgactgggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttccttctgtttgctagtagactgaggggatatttgacagtacctggaggtgactgggag 329
Query: 61 cttagatgcagcttcctgcccctcctctcctatcagttcgtgtattctgtggaatatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttagatgcagcttcctgcccctcctctcctatcagttcgtgtattctgtggaatatggt 269
Query: 121 tcacgggagtctcgttcttggagcatggcaggtggggagaagagcctgtgtttggcatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcacgggagtctcgttcttggagcatggcaggtggggagaagagcctgtgtttggcatct 209
Query: 181 ctcgatgagggttcaagttctgacttcacgttttcttaaatatgtgaccttgaataagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ctcgatgagggttcaagttctgacttcacgttttcttaaatatgtgaccttgaataagtt 149
Query: 241 attg---ttttctcccccagtatcaatttgctaatctacaaaccgagaatcatggtgata 297
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 148 attgaac----ctcccccagtatcagtttgctaatctacaaaccgagaatcatggtgata 93
Query: 298 atcataacaataaacacaacaacactaataacaacaacagtaatattatctactaggaag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 atcataacaataaacacaacaacactaataacaacaacagtaatattatctactaggaag 33
Query: 358 gacagaggtagtatttcaagttcatggaaaga 389
||||||||||||||||||||||||||||||||
Sbjct: 32 gacagaggtagtatttcaagttcatggaaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
