BAC Information

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BAC

Clone NameMSMg01-468E01
Chromosome7 (Build37)
Map Location 86,102,316 - 86,102,433
singlet/doubletsinglet
Overlap genenone
Upstream geneA330068G13Rik, Ntrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20
Downstream geneAcan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468E01.T7 (MSMg01no468_e01.b1)MSMg01-468E01.TJ (MSMg01no468_e01.g1)
ACCAG551768AG551769
length802866
length of high quality
(start - end)
126 (135 - 260)119 (145 - 263)
definitionCHROMAT_FILE: MSMg01no468_e01.b1 PHD_FILE: MSMg01no468_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:24 2005CHROMAT_FILE: MSMg01no468_e01.g1 PHD_FILE: MSMg01no468_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGAT
CCGCGGAATTCAGAATTCTTCCCAAAAAAAATGTGCAAATAAACCATTAT
GGCGCAACGGTGTAGGTGAAAGAACGTGCCCCACACGACGGCAGAAGCAA
CCACAGGGCAGGTACAGTGCCCAGTTCATCACTGTCACCCACTGCTAGAT
AGGCCTGGAAAAATGGTAGCCACAGAAATGTCTCCTGCATAAACTGCCTG
CATATGCAGGAGCCTGGGGTAAAGAGCTCTCCACTTGGAGATGGCATTCT
TCCTAAATGGACCTGCATGCCACAAAGCATATATGCTTGCAAATCCACTG
ACTCAAGGAATACAAGGTCTCTCCGTGGTTAGAAATCAGGTTATATATTA
ACTTGCTAAGAGCTGACAGCATTGTCACCAGAACAAAAACTGTAGGTTAC
TCGCGTGTCTATGTTCAACCGCTATTATTTCTAAGTAAAGTGTCTTGCTT
CTTTTTATGCTTTACTTCTCTCGTCCTCCATTACCGTTATATTTTCTTAC
CTTCTCTATGCATTTACCTTCCCTTCTGTATTATCCATAATTCTAGTCTT
CCCCCCCATTCTCATTTCCCGTTTCCTTATATCATCCTCTTTATACACTT
TTCTTCTTCTTCATCCTCTTTTTCGCCTCCTTTCGATTCATATCTCACTT
CTTATCCTCCCTCCCCCTCTTCCCCTTCTTTTTTATCTCCCTTTATTTTC
TCTCTTCTCACTCTCCCCTTTTCCTTTTTACTTTTTCACCTCCCCACCTC
TN
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAAAATTGTCTTCATGACTAACA
TATGAACAAAGTTCATCTCAATGTTTTCGCCTGGCATCAAAAGGGAAAGC
AGGTCTAGAAGGGAGGACCTTGGCTGGGTCTATGTGAAGAAAAAGAAGAC
ACCTGGGCTTGGAAGCAATGGGAGGAGAGCCATGTGGAAACACATGGCTT
GCATCTGGAGCTTGGGAGAAGGATCCTTGTCCCCGTGTGCATGTACATTA
GAAAATGACAATGATTTCTCAGGAACATGATTATTGAAGGTGGCTCTATG
GAGGTATCCCTCTTTAAATTTTGGTCTTTGCCTACTTACCACTCATTTTT
CTGTTCTTGTTTCCTTTTCCTTATTTGTTTTATATATGTTTCTTCTTTCA
CTTTTTACCTCTTCTTATTTTTCTTTTTGTTTTTCTTCTTTTTTTTTTTT
CCCTTTTTTGTTGCTACTTCCTTGCTTGTTCTTCTTTTTTTTTTATTCTC
TTTTTTATTTTGCTTATTTTCCTTTTTCTATTTTCTTTTCTTTCCCTTCA
TTCCTTCTTCTTCTTCTTTTCTCTCTTCTTCATCTCTTCTTCTTTCTCTT
TTTCCATCTATCTTCTCTTTTCTTCTCGTGTCTCCACATCCCCCTCTTAC
TCTACCTTATCATTCTTTTCTCTTACAATTCCGTTCCTTTTTCCTTTCCC
TCTTCCCTTCTTTCCTATCTTTTCCCCTCATCCTCTCATTTTTCATCTTT
CCTCTCTATTATAATATTCATTAACTTTCACTTCCTCCTTCCTTCTCTTC
TCACATCCTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_e01.g1 MSMg01no468_e01.g1 CHROMAT_FILE:
MSMg01no468_e01.g1 PHD_FILE: MSMg01no468_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:24 2005
         (119 letters)



>mm_chr7_86102116_86102633
          Length = 518

 Score =  207 bits (107), Expect = 2e-58
 Identities = 116/119 (97%), Gaps = 1/119 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagcaggtctagaagggaggaccttggctgggtctatgtgaagaaaaagaagacacct 60
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaaaccagatctagaagggaggaccttggctgggtctatgtgaagaaaaagaagacacct 259

                                                                      
Query: 61  gggcttggaagcaatgggaggagagccatgtggaaacacatggcttgcatctggagctt 119
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggg-ttggaagcaatgggaggagagccatgtggaaacacatggcttgcatctggagctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 518
Length adjustment: 8
Effective length of query: 111
Effective length of database: 510
Effective search space:    56610
Effective search space used:    56610
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)