BAC Information

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BAC

Clone NameMSMg01-468P24
Chromosome7 (Build37)
Map Location 24,564,637 - 24,565,173
singlet/doubletsinglet
Overlap geneLOC384573
Upstream geneLOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22
Downstream geneEG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468P24.T7 (MSMg01no468_p24.b1)MSMg01-468P24.TJ (MSMg01no468_p24.g1)
ACCAG552340AG552341
length755759
length of high quality
(start - end)		538 (60 - 597)430 (83 - 512)
definitionCHROMAT_FILE: MSMg01no468_p24.b1 PHD_FILE: MSMg01no468_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:25 2005CHROMAT_FILE: MSMg01no468_p24.g1 PHD_FILE: MSMg01no468_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTCTCTGTTTCACCCATCTGATCATAGGAGAATATAC
TGTAATGACTAAATGTTTTCAAAGAGGATATTTTTATTATTTTTATACAT
TGCATGTTATTCCATCTTAGTAGATGTACACTTTGCTATCTTGGACACAA
CTCAGGTGTGAGTCCAGTATTGCACAACATCACTTCCTGCTCTATCAAGC
ACTGCAGGCTTCTCATTACATCAGGAGTAAAGAGGAAAAGAGGCAAAAGA
AGTTCTTGATCAGGAGACTTAAGAGATTTAATGACTCAGATCCATGGGGG
ATACCAGGATCCAAACTGTACATCTTCTCCTTAAAGACATTGGCAAATTT
TTCACTCTAGTCCATGGTGAAATTTTTTCCAATCATCAGAAACACCTGCC
AATCAAACAGGAGACAAGTGGTATCAGAACAATGGCATTTGTCACTGTGT
CAGTGGCTTCTTCAGTCACAAAATTATTTTCTCAGAAGATTAAAATCAAG
CATCTAATCTTCTATGCTATCAGAGAATATCCAAAGATACCAGAGGCTAC
AAACTAAGTATTCTATAGTGGTTATTGTTGTCATTCTGATGAAACTCCAA
ATCTAACTTGTCATAATTACCTCTGTGAATTAAAAAAAAAAATTTAACTG
TTCCTATTCTTAAAATGGATAAGGAAGTGTTTGCCCTCTACTAGACCTTT
TCCCC

NAAAAAAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACTCTTCCCTCACCC
TTAAATACCTGATCATGTTCCCCTTTTCCCTTCCTCATCTCCCTTCCAGG
TCTCTCCCTCCTTCTGCCTCCAGTGATTGCTTCCTTCTCTCTCCCAAGTG
GGATGAAGCATCCTCATTTGTGATCTTCATCTTATTAAACATTTTGTGTT
TGGTGGATTGTATTCTGTGTATACTGTATATTTTTGGCTAATTGTATCCT
GTGTATACTATATATTTTTGGCTAATATCCACTTATTAATGAGTACATAC
AATTACTATGTAAGTCCTTTTGAGTCTGAGTTACCGCACTCAGGATAATA
ATTTTAGGTCCATCCATTTGCCTTCAAAAAAATCATGATTTACTCATTCT
TAATAGCTGAATACTATTCCATTGTGTAAATGAACCATATTTTCTGTGTT
CATTTTTCTGTTGTGGGACATCTGGGTTGTTTACAGCTTCTGGCTATCAC
AGACAAGACTGCTATGAACATAGTGGAGCACAATGCCATGGGGGTTGGGT
GGAGCATCTTTAGGGTAAATGCCCCAAAGTGGAATTGCCGGGTTCTCCGT
TAAATTACTTTCAAAGGCTTGAAACATCTCCCAAATGTATCTAAAAAGGT
TTGTTAAATGTTGCATCCCCCCACCATCGGTGTGCATTTCTTTTATTCCA
TATACTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_p24.b1 MSMg01no468_p24.b1 CHROMAT_FILE:
MSMg01no468_p24.b1 PHD_FILE: MSMg01no468_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:25 2005
         (538 letters)



>mm_chr7_24564437_24565375
          Length = 939

 Score = 1015 bits (525), Expect = 0.0
 Identities = 534/537 (99%), Gaps = 1/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttctctgt-ttcacccatctgatcataggagaatatactgtaatgactaaatgttt 59
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttctctgtatttacccatctgatcataggagaatatactgtaatgactaaatgttt 260

                                                                       
Query: 60  tcaaagaggatatttttattatttttatacattgcatgttattccatcttagtagatgta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaagaggatatttttattatttttatacattgcatgttattccatcttagtagatgta 320

                                                                       
Query: 120 cactttgctatcttggacacaactcaggtgtgagtccagtattgcacaacatcacttcct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactttgctatcttggacacaactcaggtgtgagtccagtattgcacaacatcacttcct 380

                                                                       
Query: 180 gctctatcaagcactgcaggcttctcattacatcaggagtaaagaggaaaagaggcaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctctatcaagcactgcaggcttctcattacatcaggagtaaagaggaaaagaggcaaaa 440

                                                                       
Query: 240 gaagttcttgatcaggagacttaagagatttaatgactcagatccatgggggataccagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagttcttgatcaggagacttaagagatttaatgactcagatccatgggggataccagg 500

                                                                       
Query: 300 atccaaactgtacatcttctccttaaagacattggcaaatttttcactctagtccatggt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccaaactgtacatcttctccttaaagacattggcaaatttttcactctagtccatggt 560

                                                                       
Query: 360 gaaattttttccaatcatcagaaacacctgccaatcaaacaggagacaagtggtatcaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaattttttccaatcatcagaaacacctgccaatcaaacaggagacaagtggtatcaga 620

                                                                       
Query: 420 acaatggcatttgtcactgtgtcagtggcttcttcagtcacaaaattattttctcagaag 479
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaatggcatttgtcactctgtcagtggcttcttcagtcacaaaattattttctcagaag 680

                                                                    
Query: 480 attaaaatcaagcatctaatcttctatgctatcagagaatatccaaagataccagag 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attaaaatcaagcatctaatcttctatgctatcagagaatatccaaagataccagag 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space:   490512
Effective search space used:   490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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