BAC Information

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BAC

Clone NameMSMg01-469O07
Chromosome7 (Build37)
Map Location 13,783,596 - 13,784,015
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887
Downstream geneV1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469O07.T7 (MSMg01no469_o07.b1)MSMg01-469O07.TJ (MSMg01no469_o07.g1)
ACCAG553022AG553023
length737748
length of high quality
(start - end)
---420 (75 - 494)
definitionCHROMAT_FILE: MSMg01no469_o07.b1 PHD_FILE: MSMg01no469_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:37 2005CHROMAT_FILE: MSMg01no469_o07.g1 PHD_FILE: MSMg01no469_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGTCTCTTATAATTTGCGGCGTTAAANGAATCACATTCATATAGGGTNNG
NGGAANNTGAGGTTTCTTAAAAATCTAGCNGNNGGNNCCGNAGAAATGCC
ACTAGACGATAGCCTTTACTGCCATTACCCTTCATGTCTAGATTTACTTT
GCATCGAACATCTGATCAATGCCTGGATGTCGTGTATCGAATTCACCAGC
CCCTTATAACAACATAGGTATGGTTCAGGAAACAGGTTAAGTAACTGATT
CTTGAGACTAGCTTCTTGAACGCACATTCAAACACTGTTCTGAACCTGTT
TTCGTCTACTCAGCCCTTGTTTTCTAAGCCTAGAACATAGTGGTTTCACC
ATATTATGGCTAACGACCTGGCTGTTAATAGGATGAGTCTAAGCTTCCCT
TGAACGCATTATCCTCCTGTACGCTATTCCACAGTGTTTCTTCTTCCCCT
ACCAGACTCCCTGACGCATGCAGCGGAGGAGGATCATTGTATCTATCCCC
CCACCATTATAGAGTAGTAATCTCTAGCGCCAGTGTTGACTCCTGACCTG
TTGTTGTCCTGCCCTTATTTAGAATGTCCTGCCATCTGACAGGCCTTGAT
GTCTCAAGTTCTCGTAAAATTTGCTAGTCTTATCATTTTCCTGATACCCT
CGATCTGTCTTATGCACCCTAAATACTATCCCTCCTTTATAACTCTCCTT
CCCTCACCGTGTTTCCGGTATTGTATTATCCCTTTAT
TTTTTTCGATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCCCGCGGAATTCCTGTTTTCTTGCCAGTAAACAA
AGTCTCCTGGGACACTAATGGTGTGTGCACAGACTGGGGCTTTGGAAGAG
TTTGAGTACTAAGACCACAAAGGGTTTCAAAGGAAAGAAGTAAAGGTCAG
AACCACATAGAGGAAGGATGTATCTTAGAACAGTTTGCTAAGAAAACACT
GTAATGTGCCTTCTGTTCTTCTTTTAAAATCAAATATTATCATGATTTGA
ACAGAATCATTAAATTGGAGTTTTTATGGAAGCAGAAATTGTACTTCAGG
AGATTCACTGGGCCCACAAAGAACTCACTATCTCAGGCCTCAGCTGACTG
GTCCTTTTTCTCCCTAGGTCTCTTGTCCATCTGCTCTCTGCTCTGTAAAC
CACAACAGTGATAACCCAGAAATGGTCCATACTAAGAAGGGTGACAGAGA
GAAAGACTAGCATAGAGGTGGACCAAGAAACATGCTGGATAAGTGCCTTG
CAGCCTCCTTTGGAACATTGTCCCTAGAGAGGCTTTCCAGACACAGTGAA
CTTCTTGTGAAGGTCTGAGCCTTTGGCTAAAGCCCTTCTAGATTTTCCTC
TTTTCATATATATTTTGGGCCTCCATTTCCCCGGGTGCTTTCTGGTTTGC
GTCATTCTCCACCTCCTGTTGCCTCTGAAAGTATCCTATTTTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_o07.g1 MSMg01no469_o07.g1 CHROMAT_FILE:
MSMg01no469_o07.g1 PHD_FILE: MSMg01no469_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:37 2005
         (420 letters)



>mm_chr7_13783396_13784215
          Length = 820

 Score =  766 bits (396), Expect = 0.0
 Identities = 414/420 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctgttttcttgccagtaaacaaagtctcctgggacactaatggtgtgtgcacagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctgttttcttgccagtaaacaaagtctcctgggacactaatggtgtgtgcacagac 260

                                                                       
Query: 61  tggggctttggaagagtttgagtactaagaccacaaagggtttcaaaggaaagaagtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggctttggaagagtttgagtactaagaccacaaagggtttcaaaggaaagaagtaaa 320

                                                                       
Query: 121 ggtcagaaccacatagaggaaggatgtatcttagaacagtttgctaagaaaacactgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcagaaccacatagaggaaggatgtatcttagaacagtttgctaagaaaacactgtaa 380

                                                                       
Query: 181 tgtgccttctgttcttcttttaaaatcaaatattatcatgatttgaacagaatcattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgccttctgttcttcttttaaaatcaaatattatcatgatttgaacagaatcattaaa 440

                                                                       
Query: 241 ttggagtttttatggaagcagaaattgtacttcaggagattcactgggcccacaaagaac 300
           |||||||  | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggagtagtgagggaagcagaaattgtacttcaggagattcactgggcccacaaagaac 500

                                                                       
Query: 301 tcactatctcaggcctcagctgactggtcctttttctccctaggtctcttgtccatctgc 360
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tcactatctcacgcctcagctgactggccctttttctccctaggtctcttgtccatctgc 560

                                                                       
Query: 361 tctctgctctgtaaaccacaacagtgataacccagaaatggtccatactaagaagggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctgctctgtaaaccacaacagtgataacccagaaatggtccatactaagaagggtga 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)