BAC Information

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BAC

Clone NameMSMg01-471I23
Chromosome7 (Build37)
Map Location 59,474,377 - 59,474,680
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
Downstream geneEG620782, LOC100040692, Gm1865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471I23.T7 (MSMg01no471_i23.b1)MSMg01-471I23.TJ (MSMg01no471_i23.g1)
ACCAG554299AG554300
length808780
length of high quality
(start - end)
69 (72 - 140)549 (75 - 623)
definitionCHROMAT_FILE: MSMg01no471_i23.b1 PHD_FILE: MSMg01no471_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:50 2005CHROMAT_FILE: MSMg01no471_i23.g1 PHD_FILE: MSMg01no471_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGNGGA
ANNNNGGNCCTTGCCACTCAGAAACCAGCATTTCAAGGGTGCTGTCTACT
ACCTTGTTGGTATTTTAGTGAGTTCAGTACTGTGTCGCTAAAATGGCAGG
ATGAGAAAATGCCACATAATCCCGTCTCAGAGAATTCCTTTGGTTTGGGT
GGTGTGGGTTAGGGNNACAAAAAANNCCATGAGATAAATTCCCTTTTTCG
GGCAAAGTTTTAANNAATGGNTNTTTGTCTNNNNNNTGNNNNTNNNNNCT
NNNNGTGGTGGTGGTGGGGGTGTGGGTGGTGGGNNCNNNNNNNNNNNNNN
NNNNNNNNNNAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNANNNANNNNNNNNNNNNNNNNNNNNNNNNNNANNANNNNAN
NNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAANANNNNNNNNNNNNN
NAANNTTTTTTNNNNNNNNNNAANNNNNNATTANNATTATNNNTNNGGTG
GTTGTTGT
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACAGTGTGTTTACATTATGTAAATG
AGGAGCCAGAAGTATCAGAAAATATTTGTTTCTTTCAAAATCATTAAATT
ATTTTATATANATTTGGAAGAGAAAACTAATCTGTGAAAATATTCTAGCA
TAATTTAAATTTAGCAACCCTTATTGTAACTTATGTGAAAATACAAACAA
TATGTAGATATAAAAAATGCTAGTATTTTCAATACTGTAATGACCCCTCT
CCATTCCTCTCTGTATGGGCAGAGCACACAGAGGCCAGGAGAGAACATTA
GTTCTTCTGGAGTTGGAATCATGGGTGTGAGCAGCCCAAATGAGCATGTG
GTCCAGAACTCCTGCCCTCTGCAAGAACAGCAAGAGCTCTTAACTGCTGA
GCCATCTCTCCAACTCTCAACATTTTATTGTGTATTCTAAAAAGAATTAA
TATTTAAAATAAATGTAGCTTTTGCTTAAAATATTGTTTTACTGATATGC
TTTAGCATATAACTTATAGTAAATTAAGTTCCAAAAATTTTGGCAGCATT
ATTACAAAGAATTTATAATGAGCCAGCAGGTTATCATTTCATTGACTTGA
ATCTGAAACTTTAATTNCATACATTATGATATTTTTTTCATTTAAGAAGA
TACAGAATGAAGAATTCAATTTCTTCAGAGTCTCATGCTCACACATGGGT
ATATTAAAGTTTGAAAAGATAAGAATCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_i23.g1 MSMg01no471_i23.g1 CHROMAT_FILE:
MSMg01no471_i23.g1 PHD_FILE: MSMg01no471_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:50 2005
         (549 letters)



>mm_chr7_59473785_59474733
          Length = 949

 Score =  526 bits (272), Expect = e-153
 Identities = 296/304 (97%)
 Strand = Plus / Minus

                                                                       
Query: 246 cagagcacacagaggccaggagagaacattagttcttctggagttggaatcatgggtgtg 305
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 896 cagagcacacagaggccaggagagagcattagttctcctggagttggaatcatgggtgtg 837

                                                                       
Query: 306 agcagcccaaatgagcatgtggtccagaactcctgccctctgcaagaacagcaagagctc 365
           |||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 836 agcaacccaaatgagcgtgtggtccagaactcctgctctctgtaagaacagcaagagctc 777

                                                                       
Query: 366 ttaactgctgagccatctctccaactctcaacattttattgtgtattctaaaaagaatta 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ttaactgctgagccatctctccaactctcaacattttattgtgtattctaaaaagaatta 717

                                                                       
Query: 426 atatttaaaataaatgtagcttttgcttaaaatattgttttactgatatgctttagcata 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 atatttaaaataaatgtagcttttgcttaaaatattgttttactgatatgctttagcata 657

                                                                       
Query: 486 taacttatagtaaattaagttccaaaaattttggcagcattattacaaagaatttataat 545
           ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 656 taatttatagtaaattaagtttcaaaaattttggcagcattattacaaagaatttataat 597

               
Query: 546 gagc 549
           ||||
Sbjct: 596 gagc 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)