BAC Information

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BAC

Clone NameMSMg01-472F04
Chromosome7 (Build37)
Map Location 3,301,988 - 3,302,338
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm
Downstream genePrkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472F04.T7 (MSMg01no472_f04.b1)MSMg01-472F04.TJ (MSMg01no472_f04.g1)
ACCAG554884AG554885
length765779
length of high quality
(start - end)
244 (71 - 314)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no472_f04.b1 PHD_FILE: MSMg01no472_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:55 2005CHROMAT_FILE: MSMg01no472_f04.g1 PHD_FILE: MSMg01no472_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCCAGTCTCCTCCTGACTGCCTTCTGATCAAGACTAGAACTCTCAGC
AGCTCTAGCACCATGCCTGCCCGCATGCTGCCATGCTTCCCACCATGATG
ATGATAATGGATTAAACCTCTAAAACTGTTAGCCAGTTCCAATTAATGTT
TTCTTTTGTAAGAGTTGGCTTGGTCATGGTGTCTCTTCACAGCAATGAAA
CCCGAAGACACCACTTTTAGTTGGATTGTTTCTGATGAAAGCAGAAAGAG
GGACTATTAGGTTCGGGGATTGAGCTGGAGAAGATGGGAGAGAGCTAAGA
TGAAGAAGTAGGATGAATAAGGACAAAAGTACTTGGATGCATATGCATGA
AAATGTCTATGAAATTCACCACTTTTGACATTAACTTAAAATAAATAATG
CTAGACAGTGGTGTATGCACCTTTCCTCCCAGCACCCAAGAGGCAGTGGA
AGGGGAATCTCTGTCACTTTGAGGTCATCTTGGTCTATAGAGTACATTCC
AGGCTTCCAAGGCTACCGGAAGGAACCTTGTCTTGTAAACCCTCAAATAA
ATAACACTTAATTTTTAGCATTTTAATTTCTGCTGCCCAACTATCATACA
TAACTCATCTTCACAATCCGCTTTATCTATATTGCATCGCTCTTGCCTTT
TTCCTTCCTTCTCTCCCTCCCTTTTACCTCTATTTCTCCTTTTTCTCCAA
CCTCCCCCCTTCTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGACTCCACTGCGACCTCAGCAAA
ACCGCAAAAACGACGTGTTGCTGACACCCGCGCCACCGCAGCCGCCGGCA
TTGCACGCCGGGAGTAGTTCTCCTTTGCGTCCCAAGAATAGCGTACACGA
GGGCCCCAACTATAAGTCCCAGAGTGCACTGAGCTCGACAGCCTCTGGCG
GGCCAGGATTCCCTAGAACGGCTTCCTGCCAGAATGGATCCGTAGGAAGA
CTGGAACCTCAAGAAAGGCGCATCGTGGGGCGTGACCTGGGGAAGAACTC
AGGGGAGGAGAGACCTGGGCGTGTGCATAGGAAATCCCAGGGTGACACTG
AGTTGGGAGAACCACTCAGGTGGAGAGTCTCAGGGAAACACGATAGACAC
CCAAGACAGAGCATATGGAGATCCAGAGTCAAGAAATACCCTCTGCTATT
AGCCTAGCATACGCAGGTGACAGGCCCTTATACATGGAGAGTTATTGTCA
GACGTGTTATTCGTACTAACCTCCTCCCTCGTTTTTCCCATTTACAGTAA
CGTGTAATATCCCTCCATACTATTTTTCGTTTGAACTCTTTCATCCTATT
TTCCACCTCCACCTCTTTCCCTCTTTCTTTTTTTCATCGTTTTTCCCCCT
TTTTTTCTCTTTATCTTTTTTCTTATTTCCCCCCTTATATTTAATTCTCA
GATTTATTTCCTCTCTTATTTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_f04.g1 MSMg01no472_f04.g1 CHROMAT_FILE:
MSMg01no472_f04.g1 PHD_FILE: MSMg01no472_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:55 2005
         (346 letters)



>mm_chr7_3301788_3302538
          Length = 751

 Score =  648 bits (335), Expect = 0.0
 Identities = 345/351 (98%), Gaps = 5/351 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgactccactgcgacctcagcaaaaccgcaaaaacgacgtgttgctga-----cacccgc 55
           ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||
Sbjct: 201 cgactccactgcgacctcagcaaaaccgcaaaaacgacgtgttgctgaaccgacacccgc 260

                                                                       
Query: 56  gccaccgcagccgccggcattgcacgccgggagtagttctcctttgcgtcccaagaatag 115
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gccaccgcagccgccggcattgcacgccgggagtagttttcctttgcgtcccaagaatag 320

                                                                       
Query: 116 cgtacacgagggccccaactataagtcccagagtgcactgagctcgacagcctctggcgg 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtacacgagggccccaactataagtcccagagtgcactgagctcgacagcctctggcgg 380

                                                                       
Query: 176 gccaggattccctagaacggcttcctgccagaatggatccgtaggaagactggaacctca 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaggattccctagaacggcttcctgccagaatggatccgtaggaagactggaacctca 440

                                                                       
Query: 236 agaaaggcgcatcgtggggcgtgacctggggaagaactcaggggaggagagacctgggcg 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaggcgcatcgtggggcgtgacctggggaagaactcaggggaggagagacctgggcg 500

                                                              
Query: 296 tgtgcataggaaatcccagggtgacactgagttgggagaaccactcaggtg 346
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgcataggaaatcccagggtgacactgagttgggagaaccactcaggtg 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 751
Length adjustment: 9
Effective length of query: 337
Effective length of database: 742
Effective search space:   250054
Effective search space used:   250054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)