Query= MSMg01no472_f20.b1 MSMg01no472_f20.b1 CHROMAT_FILE:
MSMg01no472_f20.b1 PHD_FILE: MSMg01no472_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:59 2005
(490 letters)
>mm_chr7_3201396_3202274
Length = 879
Score = 851 bits (440), Expect = 0.0
Identities = 470/486 (96%), Gaps = 13/486 (2%)
Strand = Plus / Plus
Query: 6 ggaattctatctgcccaaagtctttgtgtgagtccagatctctagatccttacgcaaaga 65
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattctatctgtctaaagtctttgtgtgagtccagatctctagatccttacgcaaaga 265
Query: 66 gtaaagttaggaggactcctgacttcagggctggtgggggcagggctggctgccagcctg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtaaagttaggaggactcctgacttcagggctggtgggggcagggctggctgccagcctg 325
Query: 126 agagaacaaaacgaagcaactgtgctgtagtttgagtctggtctgcaaggtgactcctgg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agagaacaaaacgaagcaactgtgctgtagtttgagtctggtctgcaaggtgactcctgg 385
Query: 186 tatatataataccagcccttggaaa-cagagtcctgagggtccagagagaaaaaagtagg 244
|||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 386 tata----ataccagcccttggaaaacagagtcctgag-------agagaaaaaagtagg 434
Query: 245 agaaagtttgaagccagtttggaccacatattaaaaatagactctgtatctaaaacataa 304
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 435 agaaagtttgaagccagtttggaccacataa-aaaaatagactctgtatctaaaacataa 493
Query: 305 ctggggccaggtgtggtgataggcatctttaagccagtatttgagagtcgaaggcaggag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctggggccaggtgtggtgataggcatctttaagccagtatttgagagtcgaaggcaggag 553
Query: 365 gatgtctgtgagttcaaggcctctcctgctctatatagcaatttcaggacagcctctact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gatgtctgtgagttcaaggcctctcctgctctatatagcaatttcaggacagcctctact 613
Query: 425 cggagaggctctctctcaaaaccacaataagccaggtggtggtggcacaggcctttaatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cggagaggctctctctcaaaaccacaataagccaggtggtggtggcacaggcctttaatc 673
Query: 485 ccagca 490
||||||
Sbjct: 674 ccagca 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 879
Length adjustment: 10
Effective length of query: 480
Effective length of database: 869
Effective search space: 417120
Effective search space used: 417120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_f20.g1 MSMg01no472_f20.g1 CHROMAT_FILE:
MSMg01no472_f20.g1 PHD_FILE: MSMg01no472_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:59 2005
(278 letters)
>mm_chr7_3378187_3378864
Length = 678
Score = 491 bits (254), Expect = e-143
Identities = 272/278 (97%)
Strand = Plus / Minus
Query: 1 aattctcagcaacaatatggtggctcacaaccatctgtaatgagatttggcaccctcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aattctcagcaacaatatggtggctcacaaccatctgtaatgagatttggcaccctcttc 501
Query: 61 tggtgtgcaggcatatatgtaggcagaacactataatacatagtaaataaataagttttg 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggtgtgcaggcatatatgtagacagaacactataatacatagtaaataaataagttttg 441
Query: 121 agagagggtgggggtacacttgcaggaagccttctctgacctctgcagcctgtatccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 agagagggtgggggtacacttgcaggaagccttctctgacctctgcagcctttatccagg 381
Query: 181 ctgtctatgcttccaacttgccttctctaccagcaaccaggtaccccacctagtggttgc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 380 ctgtctatgcttccaagttgccttctctaccagcaaccaggtaccccacctagtgtttgc 321
Query: 241 tctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtg 278
| |||||||||||||||||||||||||||||| |||||
Sbjct: 320 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
