BAC Information

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BAC

Clone NameMSMg01-472H12
Chromosome7 (Build37)
Map Location 37,120,475 - 37,297,468
singlet/doubletdoublet
Overlap genenone
Upstream geneRhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472H12.T7 (MSMg01no472_h12.b1)MSMg01-472H12.TJ (MSMg01no472_h12.g1)
ACCAG554995AG554996
length762756
length of high quality
(start - end)
249 (69 - 317)249 (324 - 572)
definitionCHROMAT_FILE: MSMg01no472_h12.b1 PHD_FILE: MSMg01no472_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:07 2005CHROMAT_FILE: MSMg01no472_h12.g1 PHD_FILE: MSMg01no472_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,120,475 - 37,120,722)(37,297,220 - 37,297,468)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGTAGGTCCGCG
GAATTCACTTATCACCCAATAATATAAGGATAAAAATAATTTATGCTCCT
ATTTTAATTAAAAACAAATCATTTTCGTAAAGCGGTAGGAGCCCAGTCTA
GTGGTTAGGTCAGGAAGTGGGAGTAGAGACTCTTTGAGCTTGCCTCTGGG
CTTGTGTTGGGACAGGCTGCATGTTTGGGTCAGGTTTTTAACCCTGCCCC
ATTGCTCTTTGCAATCACAGCCATACAGTTTGGTTTCACCCATATCACAC
CATGAGAGGTTGCTAATTTTTATTTTATTTTATGTGGCTAAATCCTGGCA
TCGGTCTAAAAGGTTGATGGTTGATGCTTCCGATGGAGAGGTCAGGGTGG
CAATAACCAACCATCTTGGGACCGAGAGGGGATTCCCATGGCCACCGGAA
TCTATCCAAAGCCCATGGACAGAAGCATGGACGAACTCTGATCCCTGTGA
CTGAACCATGTCCCAAGTTCAAGGAAGGAAGGGAAATGATAAATGGGTGG
TGTGGATAGAGGAATCAGTTCCGTGACTTCTTTCTGAAGGTTTCAGACAT
CCGTTTTCTTCCAGTGGTCCATTTTTGCCCACTGCTTTTGCCCTTTACTG
TTTTTTTTCCTGTTCGCTTTTCCCTTTTCCCATCTCACCAATTTTCTTTT
TTACGTTTATTCTTCCCTCCGTTTTGCGGGTTTGTGTATTTTTTCCAAAT
ATTCTTTTTTTT
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGNCTGTGATACATAGGGATTACA
GAGGTGACCGCACTGCTTGGTTGCTGGAATGTTCTAGAAGGATGTGTTAG
AAGAGACCTTTACATAGGACACGTAGTCAGATTCTGCTGTATGCCTTGGA
TCTCCCTGGAAGAGCCATGGTTCTTGGTTCTGAAATCTCAGCTTGTATTA
TATCCACTCGGGTTGCCAGCATGAATATAGCACACTGAGTCTTAGTTCAG
CTTCACACACCCATTCTTCGTTCACTCCAATCAAAGACTGTTATGCCTAC
TAACTCCTTAAGTGTCAACAGCTTAATGTGCAGGCCTCTTGCCACTGGAG
TCTTCTTTTCCGTAGGTCACTCGGTCACTGAGTCCCTCCTCTGGTGTGGT
CTCAGCCAGCTGAGAACAGCTGTAGGCAAAACAGTCCTGGGTGGTGTTAC
CCATGAGAACTCAGGCAAAGAGACCACTCCTTTCTCACTGTTCCTTTCTG
GAGACAGATGGTCACAGGATCATGCAGGAGATAGGGTCTCATCTATGCCC
GCATCCTGGCTGGTCAACAGAAATAGTTTTTCATGGAGGCTGGATGCTGT
TTTTGCCTGCTTTAACCCACTTCAGAAGAATTCTTTGGGATTATTTTCCC
GTTGTACATGTAAAACCCGGATTGCCCCCGATGGGATTTTACTTTGTCCT
CGCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_h12.b1 MSMg01no472_h12.b1 CHROMAT_FILE:
MSMg01no472_h12.b1 PHD_FILE: MSMg01no472_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:07 2005
         (249 letters)



>mm_chr7_37120275_37120923
          Length = 649

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatataaggataaaaataatttatgctcctattttaattaaaaacaaatcattttcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatataaggataaaaataatttatgctcctattttaattaaaaacaaatcattttcgt 260

                                                                       
Query: 61  aaagcggtaggagcccagtctagtggttaggtcaggaagtgggagtagagactctttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcggtaggagcccagtctagtggttaggtcaggaagtgggagtagagactctttgag 320

                                                                       
Query: 121 cttgcctctgggcttgtgttgggacaggctgcatgtttgggtcaggtttttaaccctgcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 cttgcctctgggcttgtgttgggacaggctgcatgtttgggtcaggttcttaaccctgcc 380

                                                                       
Query: 181 ccattgctctttgcaatcacagccatacagtttggtttcacccatatcacaccatgagag 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ccattgctctttgcaatcacagccatacagcttggtttcacccatatcacaccatgagag 440

                   
Query: 241 gttgctaa 248
           ||||||||
Sbjct: 441 gttgctaa 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no472_h12.g1 MSMg01no472_h12.g1 CHROMAT_FILE:
MSMg01no472_h12.g1 PHD_FILE: MSMg01no472_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:07 2005
         (249 letters)



>mm_chr7_37297020_37297668
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccaatcaaagactgttatgcctactaactccttaagtgtcaacagcttaatgtgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actccaatcaaagactgttatgcctactaactccttaagtgtcaacagcttaatgtgcag 390

                                                                       
Query: 61  gcctcttgccactggagtcttcttttccgtaggtcactcggtcactgagtccctcctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcctcttgccactggagtcttcttttccgtaggtcactcggtcactgagtccctcctctg 330

                                                                       
Query: 121 gtgtggtctcagccagctgagaacagctgtaggcaaaacagtcctgggtggtgttaccca 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 329 gtgtggtctcagccagctgagaacagctgtaggcaaaacagtcccgggtggtgttaccca 270

                                                                       
Query: 181 tgagaactcaggcaaagagaccactcctttctcactgttcctttctggagacagatggtc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 269 tgagaactcaggcaaagagaccactcctttctcactgttcctttctggagacagatgggc 210

                    
Query: 241 acaggatca 249
           |||||||||
Sbjct: 209 acaggatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)