BAC Information

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BAC

Clone NameMSMg01-472M12
Chromosome7 (Build37)
Map Location 94,863,478 - 94,863,732
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneFolh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472M12.T7 (MSMg01no472_m12.b1)MSMg01-472M12.TJ (MSMg01no472_m12.g1)
ACCAG555234AG555235
length742755
length of high quality
(start - end)
268 (51 - 318)255 (327 - 581)
definitionCHROMAT_FILE: MSMg01no472_m12.b1 PHD_FILE: MSMg01no472_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:31 2005CHROMAT_FILE: MSMg01no472_m12.g1 PHD_FILE: MSMg01no472_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTCCCGTTCTGAGCCCCATTTTTTAATGGGGTTATTT
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAATGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGT
TTCATTAGGTCCCACATTGCCCTTTCTAAATCATTGAAGAATTGAGTTGG
AATTTTGATGGGGATTTTTTTGTATCTGTAGATTGCTTTTGGCAAGATAG
CCATTTTTACTATATTGATCCTGCCAATCCATGAGCATGGGACATCTTTC
CATCTTCTGAGATCTTCTTTAATTTTTTTCTTCAGAGACTTGAAGTTCTT
ATCATACAGATCTTTCACTTCCCTAGAGTCATGCCAAGGTATTTTACATT
ATTTGTGACTACTGATAAGGGTGTTGTTTCCCTAATTTCTCTCTCAGCCT
GTTTATCCTATGTGTAGAGAAAGGCCATTGACTTGGTTGAGCTAATTTTA
TATCTAGCTACTTCCCTGAAGTTTTTTTTTTTGTTCTTAGAATTTCCTTG
TTGTATTTTTATGGTCACTTCTATTTACTATCCTATCTTCCGCCTAATAT
GCTTATTTTGACTTCCTCCTTTCCCAATTTTATCATGGTGTG
NCCCCGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTATAGCTAGCATTGTGA
GCAGAGATGTGAGGGTAAACGCCTCACTTCTGGAAGACACAACAAGCTAG
ACTTGATTAATCTCAAATCCTATGGGATTATGAAGAGACAAGTAATGACA
AAAGGCCAAGGAAAGAGTTTTGTCAATGTATGCACATTCATAAGAGGGGC
AGACTAATGAATCCAGGGATCAACATTTATCTCTTAGACCTGACATGCGC
TTTAGTCCTATGGAGAACTGTTTTTAAGGAAAAGGCCAGTGTGTGGCTTC
ATCATTGTCTATCTGTTGTTTCTGTGGTGCTGCAAGCACTTTTGAGAGTC
TTCCTGAAGTCTAATATACCCTGTCTAAGTGCTGCATCTATGATGCTAAA
AGAAAACTCTCATCACAGTCGTCCTGAAGATCAGGACTTGTCAGAAGATG
ATTCCATCTGCTTCAGGGTGCTGCCTCACTATCATGGATGACTGCCTTCA
TCTGGAGATAGGGTTAGGGACCTCTTCTGGGCAATTTAGTTCTCTTATTC
CCAGATGCCTATAGATTTAGCAATGAATGATCTCTGTAATTTCCCCCAGA
ATGAACGAGACAGACGCCNAAGTATGTAGAAATGTCAGAATTTTTTCCCT
GGTTTGCACTTCCTTGCGAGGNAGAGAAAGCTCCCTCTTTTTTTCCACGC
ACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_m12.g1 MSMg01no472_m12.g1 CHROMAT_FILE:
MSMg01no472_m12.g1 PHD_FILE: MSMg01no472_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:31 2005
         (255 letters)



>mm_chr7_94863278_94863932
          Length = 655

 Score =  485 bits (251), Expect = e-142
 Identities = 254/255 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaaaggccagtgtgtggcttcatcattgtctatctgttgtttctgtggtgctgcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aggaaaaggccagtgtgtggcttcatcattgtctatctgttgtttctgtggtgctgcaag 396

                                                                       
Query: 61  cacttttgagagtcttcctgaagtctaatataccctgtctaagtgctgcatctatgatgc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cacttttgagagacttcctgaagtctaatataccctgtctaagtgctgcatctatgatgc 336

                                                                       
Query: 121 taaaagaaaactctcatcacagtcgtcctgaagatcaggacttgtcagaagatgattcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taaaagaaaactctcatcacagtcgtcctgaagatcaggacttgtcagaagatgattcca 276

                                                                       
Query: 181 tctgcttcagggtgctgcctcactatcatggatgactgccttcatctggagatagggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tctgcttcagggtgctgcctcactatcatggatgactgccttcatctggagatagggtta 216

                          
Query: 241 gggacctcttctggg 255
           |||||||||||||||
Sbjct: 215 gggacctcttctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)