BAC Information

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BAC

Clone NameMSMg01-473E12
Chromosome7 (Build37)
Map Location 37,481,471 - 37,481,741
singlet/doubletsinglet
Overlap genenone
Upstream geneDpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473E12.T7 (MSMg01no473_e12.b1)MSMg01-473E12.TJ (MSMg01no473_e12.g1)
ACCAG555617AG555618
length7761,157
length of high quality
(start - end)
274 (44 - 317)---
definitionCHROMAT_FILE: MSMg01no473_e12.b1 PHD_FILE: MSMg01no473_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:18 2005CHROMAT_FILE: MSMg01no473_e12.g1 PHD_FILE: MSMg01no473_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACGCGGGTTACCCTCGAGCGGTGGCGGCTGAGCGCCAGCCAGAGCTT
GAGAGGCGCGGGCGGCGGCGCATCGATGCGCTGCGGGCTCGATTGCGTCT
CCCTGGGCCAGCTCTTAGGCCGGGAATGGGGCGGCCGCGGCGCAGCGGGC
TCTGGGCGGCGGTGGCTGGGGTGGCCTCTGGGCCCCCAGCTCCCGGGAGC
AGCACTATATCTGGGTGCTCCGGCTGGGACCCTGAAACCCACGCGAGCCC
CGAGGCCCACAGTCTACCCTTTTTTTCGGCACCCTGCGCCCCAGGACTAG
CTGCCTGAGCGCACTGGGAGCTGCAAACCCTGGCCTTCCTTTCTTGCTTC
TTTTTTTCTTCTTCTTCCTCTTATTTTAAACTTATTCTTCTCTTCCCTCT
TATTCAGCCCTGTCTCTTTTTCATGCTTTCTTTGTGGTTGGTTTTTCAAG
TTTGTTTTAAAAGCTCACAGCGTGCTTTCTTTTTCTTATAGACCAGGAGA
CCAAGATCCCACCCTACCGGTAAGATCATAAGTTTCCGCTCGGCCCTCGG
CGGGTGGATTTGGCTTGGTTCCCGACGTCCCCCTGAATGTATATGTGTGG
CCGTTCGCCCTCTTTTTTTCTTTGGCTGACCTCGGTCCCTATCTTTCGAT
ATTTGCTTTACCCCGTACTGCCTCCCGTGTATTATACACATTCATCAACT
CTGCCCCGCCCATCTTCTTCTAATTN
ATATTTGATATATATAAAGGAAGAGAATGTCGTTGTTTCGATTTAAGGAN
GGATAGGTTGAGATTTACATAATTGTATTCCTGATATATCATTATTAATT
TGTATATACATAATTAATATATTGATAATAATAACTATCTTTTATTTTAA
CAGTGAGATGGTAAGTTATAATCGATATTTATATATATAGATATACATTC
TATTTATTTTATTTTTATTTAGCAGATGTTTTAATAACAATTATTTATTT
ATTCTGAGTTCTTTAACTGATTACGGTCTAGTTAGATTTACACTGACGAT
AATAATGAGGTTACTGAGATGTAGTTTAGGAGAGGTATGGTGGGATACGT
TTTTGTGCCGTATGGTCGTTGCGGTTGATGTATTCGTTTCGTTCATTCGT
TCGGCTTTAGGTAGTAGTTATACGATTACTTCGTCTATCGTGACGTCGTT
AAATTTCGTATTACAGATACGGGACGATTTGAACGAGTAGATCGTTGCAG
TCGTCGAATCGATAGCGATGTATTGATTATAATGATACAGTATTGTTACT
AATCGTATTGCGTATATATTTACGACAAAATAGAAATATCGGAAGTAAAG
AATTTCGTATGTAAGATTAGGTATACGTATATTTCTATGTATAAGTTATA
CATAAACCGCGGATTGAGGATGACGTAAGCTATATATACAACTGAGGATT
ATAATGTTCAGCGAAATATACTATTAATACATTTAATATATTAATTACGA
TACAGTATAAACTATACAAATTCTGATATAAATCCTACATATAATTAATT
GACAATTATATTGTACACGGTAGCTATTTGTTAATATATAATATAATATA
GATATCATTACATTTGTATATAGCATATATTGGTATAATATTTCGCTATA
TTATCGAAACGACACTGGAATAAANTATGTAATAACTGTAAATGATGATA
AATAAATTAAAATAGCTGATATATGAATAAATGAGACAATATAATCATAC
GCGCTATATACTAGTATAAAACATGCTGAATGATGCACATTAAACAATAG
TAAATGTGGTATATAATTATATAGTCTAGATGTAAAATGGAATATAATTA
TATCAGCGCTCAATATAATCGCATATGTGATAATTGAGTAATCTCTAATC
TCACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_e12.b1 MSMg01no473_e12.b1 CHROMAT_FILE:
MSMg01no473_e12.b1 PHD_FILE: MSMg01no473_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:18 2005
         (274 letters)



>mm_chr7_37481268_37481941
          Length = 674

 Score =  501 bits (259), Expect = e-146
 Identities = 268/271 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacgcgggttaccctcgagcggtggcggctgagcgccagccagagcttgagagg 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggaattcacgcgggcgaccctcgagcggtggcggctgagcgccagccagagcttgagagg 415

                                                                       
Query: 64  cgcgggcggcggcgcatcgatgcgctgcgggctcgattgcgtctccctgggccagctctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cgcgggcggcggcgcatcgatgcgctgcgggctcgattgcgtctccctgggccagctctt 355

                                                                       
Query: 124 aggccgggaatggggcggccgcggcgcagcgggctctgggcggcggtggctggggtggcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aggccgggaatggggcggccgcggcgcagcgggctctgggcggcggtggctggggtggcc 295

                                                                       
Query: 184 tctgggcccccagctcccgggagcagcactatatctgggtgctccggctgggaccctgaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tctgggcccccagctcccgggagcagcactatatctgggtgctccggctgggaccctgaa 235

                                          
Query: 244 acccacgcgagccccgaggcccacagtctac 274
           ||||||| |||||||||||||||||||||||
Sbjct: 234 acccacgtgagccccgaggcccacagtctac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)