BAC Information

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BAC

Clone NameMSMg01-474E16
Chromosome7 (Build37)
Map Location 15,399,335 - 15,399,704
singlet/doubletsinglet
Overlap genenone
Upstream geneSult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312
Downstream geneLOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474E16.T7 (MSMg01no474_e16.b1)MSMg01-474E16.TJ (MSMg01no474_e16.g1)
ACCAG556388AG556389
length738791
length of high quality
(start - end)
482 (48 - 529)142 (72 - 213)
definitionCHROMAT_FILE: MSMg01no474_e16.b1 PHD_FILE: MSMg01no474_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:41 2005CHROMAT_FILE: MSMg01no474_e16.g1 PHD_FILE: MSMg01no474_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCTTGTCCCAACCCCTTGTCCCTTGGCAGAACCCCTTAGTTAT
GCAAACTTGTACTTTCCCTGCCCCGCTCTCCCCCCTTGAGTTTTTCCTAT
ATAAGCCTGTGAAAAATTTGGCTCGAGGTCGATTCTCCTCTACACCATAC
TTGGTGCATGAGTTTCGACCCCAGAGCTCTGGTCTATGTGCTTTCTTGCT
GTTGCTTTATTAAATCTTGCCTTCAACATTTTGAGTTCGGTCTCAGTGTC
TTCTTGGGTCCGCGTCTGTCCCGAGGCTTGAGTGAGGGTCTCCCTTCGGG
GGTCTTTCAGTCTTATTTCTCCCCCCTCTAGTGAGGTAGACATTCCCCAT
CACCTAAGCACACACTTCCCTGACTGTCCATGACATTGGCCCAGTTCCAA
GTTGTAGAAGGGTTGTTAAGATGAATTCCGGGCTGGATTTCCATTGCCTT
TAGTCTTGCAATGCATAAATCTGGTACAGTTGCGAGGCATAGACAGTGGC
TCCTCCAAGTGTCTGGGAGGCATAAACCTCCAGGTACTCCGTCCAAATTT
CTGAGTCCTAAAAGACACCTCCTTACTCTGGGTCTTTTCTTGTCAGGTTC
TTCTTGTCTTCCCTGTTTCCTGTCCTCCATGACAATTTCATGTTTCTTGC
GCAGAATTTTTGCTACGTTATATCGACCTTCATCCCTA
NCCGATGATANNGNNAGGNCTGGNGGNCGCCTGGTTCACCAATTTAGGTG
AACTATAGAAGTATCCGCGAAATTCAATGCTCCTCCCTCACGTTGGCTCC
ACCTACTTGCAATATTCAAATCCTTAATTCTCACACACCCTTTGATGCTC
CTCTGGTGGTAAAGCTCATGNCCTTTTTTTTCCTTTGNAATACTTTCTTT
CCTTTTTATTTTATATTTCCTTAACTTCTATTATTTCACAGNCCCAAACA
CTGTTTTTNTTCCANACCTATCTCCGAGTCTNCTGTGGCGGTGGNNNNNN
NNNAAACANNNNAAAATTTTTAATAGTTTGGGCCACGGGCTGGGGGGGGG
GGGGAAAGTCTTTTNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAACATTT
AAACTCACAAAANNNNNNNNNNNNNNNAAANNNNNNNNNNNNNNNNNNCC
CCCCAAANACTCCTGCCAAAAAAACACCCCNAAAAAAAANCCTCTNNCNC
AAAGAAACCCCCCTCCCTAAAAANACCCCCCCCCCCCCCNNNNNCNNTTT
NAGATATNAACTAACAAAAACCCCCNCCCCCCCCCCTCTNNCCTCTAACN
ACACCCCNTTCCACTNCTTTNCCCCCCCACCNNNCNTAATNTCTCCTTTT
TTTTTTTTTTTTTTCCTTTCNNNCNCTCTCNCCNCCCCCCCCCCACCCAC
CCTCCCNCCTTCCCCNACTCTTCNNCCCCCTCCNTCNNCCCCCCTCCCCC
TCTTTCNCCTTTACTCTCTTTTCCTCTTTTATTTGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_e16.b1 MSMg01no474_e16.b1 CHROMAT_FILE:
MSMg01no474_e16.b1 PHD_FILE: MSMg01no474_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:41 2005
         (482 letters)



>mm_chr7_15398823_15399704
          Length = 882

 Score =  677 bits (350), Expect = 0.0
 Identities = 365/370 (98%)
 Strand = Plus / Minus

                                                                       
Query: 113 tgaaaaatttggctcgaggtcgattctcctctacaccatacttggtgcatgagtttcgac 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tgaaaaatttggctcgaggtcgattctcctctacaccatacttggtgcatgagtttcgac 823

                                                                       
Query: 173 cccagagctctggtctatgtgctttcttgctgttgctttattaaatcttgccttcaacat 232
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 822 cccagagctctggtctatgtgctttcttgctgttgctttattaaatgttgccttcaacat 763

                                                                       
Query: 233 tttgagttcggtctcagtgtcttcttgggtccgcgtctgtcccgaggcttgagtgagggt 292
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 762 tttgagttcggtctcagtgtcttcttgggtccgcggctgtcccgaggcttgagtgagggt 703

                                                                       
Query: 293 ctcccttcgggggtctttcagtcttatttctcccccctctagtgaggtagacattcccca 352
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ctcccttcaggggtctttcagtcttatttctcccccctctagtgaggtagacattcccca 643

                                                                       
Query: 353 tcacctaagcacacacttccctgactgtccatgacattggcccagttccaagttgtagaa 412
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 642 tcacctaagcacacacttccctgactgtccatgaccttggcccagttccaagttgtagaa 583

                                                                       
Query: 413 gggttgttaagatgaattccgggctggatttccattgcctttagtcttgcaatgcataaa 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 582 gggttgttaagatgaattccgggctggatttccattgcctttagtcttgcaatgcaaaaa 523

                     
Query: 473 tctggtacag 482
           ||||||||||
Sbjct: 522 tctggtacag 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)