BAC Information

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BAC

Clone NameMSMg01-475H03
Chromosome7 (Build37)
Map Location 145,459,843 - 145,460,224
singlet/doubletsinglet
Overlap geneTcerg1l
Upstream geneEbf3, 9430038I01Rik, Txnl2, LOC435235
Downstream geneLOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H03.T7 (MSMg01no475_h03.b1)MSMg01-475H03.TJ (MSMg01no475_h03.g1)
ACCAG557270AG557271
length794757
length of high quality
(start - end)
382 (76 - 457)354 (83 - 436)
definitionCHROMAT_FILE: MSMg01no475_h03.b1 PHD_FILE: MSMg01no475_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:13 2005CHROMAT_FILE: MSMg01no475_h03.g1 PHD_FILE: MSMg01no475_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTCTCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTACCAGATTGCCGTGTGTGACCTGCAACCTTCTGGACA
GCTAGGGTTTTTCCACAGACCACCTGCAGAGATCCATCTGTTCCACATTA
GGAGAGAATGCTGGAGCCCTGCCAGGAAACTGGGATTAGCTGAGGCTACT
GAGTGTTGTCCCCTCCCCACCACCTTGATCTCTGTCCCTAAGGGTTGACC
TGCAACTGTCTTTGTGCTTCCTCCTTTGGAACCCCTGGCCCTTCTCTCAA
GCCCAGTTCCCCAGTAATTCTCATGCATATACCAATACACTGTGGCTTTC
CTTTAACAGGCCAGTACCTCCTCAGATCAGCAATGGGGGCTAGCTGGACA
CTTCTCAGCGAGCTTTTCTCGTCATCCGTCTGTGGCAGGCCCTACTGGGA
AAGCCTGGGTCTTGGACCTGAAAACCCGGTCGCAGGTGTTGGGAAGACAA
GGCCCCACCTAGGCTATTGTCCTTTCTACTGTTATCACCATAGTCCTTTG
GACAGTTATCCCCTCCCCCCCCTTTGTTATCTTTTCCGACCCGTTTCCCC
CCCCTCTCCCCCCGTTTTTTCCCCCTCTTTTTCCCCACCCACTTCTTTTA
CCCTTCGTCTTTCCTTCCTCCCCCCTATTATCCCCCCATCCCTCCTTCTC
TCCTCCTATTATTTCCTCCCTTTTTTTCTCTCCTTTTCTTCTTCCCTCTC
TTTAACTCCCCTCCTTTATCCCCACCTTTCTTTCATCTCTCCTG
CCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTAACATTAGTCAGG
AGGGATAAAGAAGGCCACTATATATTAATAAAAGGAATAACCCATCAAGA
TGGTGGAACAGTTGACTACATGTATGTCCTAAGCTTTGGAGCTTCTGAAT
TCAAACATGAGTAACACACACACACACACACACAAATGGACATGAAGGAC
CAGATGGGCCCTGATACAGTAATAGTGGGTAACTTCAATTTTCCACTTCA
CTAAGAGGTCAGTTGTCAAGACTAAAAGATCAGTGAAGAAACTTCAGAGT
TAATTTGCATCATAGATCAAATGAACTTACAGATATTGACAGGGTATTAC
AGTGCTATGCCTTTAGGATACACATTCTTCCCACGAGCCCATAGAACCTT
CTTTTAAAATTTTAGGTTATAAGACAAAATTTAACAAGGAAGCCAATAAT
GTAAATAATTTACTGTGCCTCATATGGCTATCATGGAGCAAAACTACTTG
ATACAATAACAAGACGAATCTTCAGTCCCTTTCAAATATTACAGATGCCC
GCTGGACCCTCCCCGGCAACGATAACTTACCCCATAAGATCCCCACCCAT
CCTCCACAAAAAATTTTCTTATGGCCCGTCCCCCTCCTTCCACATGCCTT
CGGTTCTTTTCCCGTGTTTCCTTTTCACTTTCCCACTTCCCCTTCTCCGT
TTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h03.b1 MSMg01no475_h03.b1 CHROMAT_FILE:
MSMg01no475_h03.b1 PHD_FILE: MSMg01no475_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:13 2005
         (382 letters)



>mm_chr7_145459643_145460424
          Length = 782

 Score =  677 bits (350), Expect = 0.0
 Identities = 374/382 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtgacctgcaaccttctggacagctagggtttttccacagaccacctgcagagatcc 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgtgtgacctgcaaccttctgaacagctagggtttttccacagaccacctgcagagatcc 523

                                                                       
Query: 61  atctgttccacattaggagagaatgctggagccctgccaggaaactgggattagctgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atctgttccacattaggagagaatgctggagccctgccaggaaactgggattagctgagg 463

                                                                       
Query: 121 ctactgagtgttgtcccctccccaccaccttgatctctgtccctaagggttgacctgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctactgagtgttgtcccctccccaccaccttgatctctgtccctaagggttgacctgcaa 403

                                                                       
Query: 181 ctgtctttgtgcttcctcctttggaacccctggcccttctctcaagcccagttccccagt 240
           || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 402 ctctctttgtgcttcctcctttggaacccctggcccttctctcaagcccaattccccagt 343

                                                                       
Query: 241 aattctcatgcatataccaatacactgtggctttcctttaacaggccagtacctcctcag 300
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 342 aattctcatgcaaataccaatacattgtggctttcctttaacaggccagtacctcctcag 283

                                                                       
Query: 301 atcagcaatgggggctagctggacacttctcagcgagcttttctcgtcatccgtctgtgg 360
           |||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 282 atcagcaatgggggttggctggacacttctcagtgagcttttctcgtcatccgtctgtgg 223

                                 
Query: 361 caggccctactgggaaagcctg 382
           ||||||||||||||||||||||
Sbjct: 222 caggccctactgggaaagcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)