BAC Information

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BAC

Clone NameMSMg01-475O10
Chromosome7 (Build37)
Map Location 126,590,633 - 126,590,871
singlet/doubletsinglet
Overlap geneGp2
Upstream geneLOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871
Downstream geneUmod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475O10.T7 (MSMg01no475_o10.b1)MSMg01-475O10.TJ (MSMg01no475_o10.g1)
ACCAG557619AG557620
length767763
length of high quality
(start - end)
245 (75 - 319)239 (89 - 327)
definitionCHROMAT_FILE: MSMg01no475_o10.b1 PHD_FILE: MSMg01no475_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:50 2005CHROMAT_FILE: MSMg01no475_o10.g1 PHD_FILE: MSMg01no475_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGACATCCGCG
GAATTCTGTAAGATTACACACTTTCATATTTCTCTACCTAATTGGTGTCT
TCTCTCAGTTTCCATTTGACTAGAAAAACATTGAATATTGCTTTGTTATA
GTCTGTGTCTTAAGTGTCCCAGCTCACGTATTGAAAGGCCTGATCCTCCT
CAAGGCTACAAAACAGTATTCAAAGTTGGGACCTTTGGGGGTGGTTGCAT
CAGGACTCAGATCTCATTATCCAGGTAATCCACTGATGGATGCTTAGCTT
AGATGGTTGGGAAGGAGAGTTTTTGCTATAAAATTCCCTCTCTCCCTCCC
TCTTTGCGCCTTTCCTTCTCTCCCCTTGCTGACCACCATGAATTACTCAG
CTTTACCCACTGTATGTGCCCTACAATGATGCACTACCTCACCAGGCCCA
GACACAATGGAGCCAAGTGACCAGGACTTTTGAAACCTTGAACTGAAACA
AAGGGGGAAAGCCACTGCGGAATTATTGGATGGCCAAGAGGACCACCTCT
TGCTGTGAAGACGTACTCCTCAGCAATTCTAAGCCTCCTACTTGGAAATG
ACTTTCCCAGAACCGCCCCTATCATAATTGCAACAATTCGCTACCTTTTG
GCATCCACATATTTTTTTTGTTTTCTCCCCTCGATCTGGTCACCTATTAA
TCACTACCCAATCTTTACCGTTTGATATCTCTATATGGAACTTGTTCTAC
CCCTTCTCTTTACATTN
CTCTCTCCCTCCTTCGCATTACTCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCCCGCGCAATTCTCACAGAA
ACCACACCATCAAAAAGAAGGTCATATGATGAGATATCCAAGGGCTTTAG
GCCACAGGTGCACAGATATCCATATCCATGACATGCTGCACATAGGGGAC
AGGTGTTTACATTTTGATATAACAAGAGTTTTATGTCTCTGCAGTCTTGC
TCTACAAATCGACTTCGCAGTAGTGGACCAGCCATTGACTATAATCGGGT
TCTGGATTTAGGACCCATCACTAAAAGATGTATAGTGGGTGAGACTTGAT
GCAAGGATAGCTGGCCAAGTGCTGTTAATTAACCTTAGATGCTTGGAGTT
ATCATTGTCAGCAGCCCTGGGTTTTTCTGGGTTTTTTTCTTGTTCCCGAT
CCTCGCTTTTTCCCGCCCCCCCCCCCCCTCTCCCCCCCTTCCCCCCCCCA
TCCTCCCCCCCTCCTTCTCTTTCTCTCTTCCCCCCCCCCTTTCCTTTCTT
TACCCCCCCCCTTTTTTTTTTTCCCCCCCCCCTTCTTTCTCCCTTTCCCC
CCTCTTCTTCTTTTTTTTCATCCTTTCCCCCCCTCCCTCCTTTTCCCCTT
CCTCCTTCCTTTCTCCCCCCCCCTCCCCTCTTTTCCCCTCCTCCCTTTCT
CTTTCCTTTCCCCCTCTCCCCTTTTATTTTCCCCCTCCGCTTATTTTCTC
CCTCCTTCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_o10.g1 MSMg01no475_o10.g1 CHROMAT_FILE:
MSMg01no475_o10.g1 PHD_FILE: MSMg01no475_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:50 2005
         (239 letters)



>mm_chr7_126590433_126591071
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcacagaaaccacaccatcaaaaagaaggtcatatgatgagatatccaagggcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 439 attctcacagaaaccacaccatcaaaaagaaggtcatatgatgagatatccgagggcttt 380

                                                                       
Query: 61  aggccacaggtgcacagatatccatatccatgacatgctgcacataggggacaggtgttt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 379 aggccacaggtgcacagatatccatatccatgacatgctgcacacaggggacaggtgttt 320

                                                                       
Query: 121 acattttgatataacaagagttttatgtctctgcagtcttgctctacaaatcgacttcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acattttgatataacaagagttttatgtctctgcagtcttgctctacaaatcgacttcgc 260

                                                                      
Query: 181 agtagtggaccagccattgactataatcgggttctggatttaggacccatcactaaaag 239
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agtagtagaccagccattgactataatcgggttctggatttaggacccatcactaaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)