BAC Information

Click to search

BAC

Clone NameMSMg01-476M08
Chromosome7 (Build37)
Map Location 19,525,373 - 19,525,616
singlet/doubletsinglet
Overlap geneNova2
Upstream geneCeacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik
Downstream geneNanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476M08.T7 (MSMg01no476_m08.b1)MSMg01-476M08.TJ (MSMg01no476_m08.g1)
ACCAG558283AG558284
length754766
length of high quality
(start - end)		244 (72 - 315)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no476_m08.b1 PHD_FILE: MSMg01no476_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:59 2005CHROMAT_FILE: MSMg01no476_m08.g1 PHD_FILE: MSMg01no476_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCACACTCTATCAAAAAATAAGCTAAAACACTACATTTGTTTCGAGA
CAGGGTCTCTCTATTATGTAGCCCTGGCTGTCCTGGAACTCACTATATAG
ACCAGGCTCATAGACATCTATCTCCCAAGTGCTGGGATTAAAGTGTGTAC
CACCATACCCACCTTTATGAAATATTTTTAAGTGGCTTGTTTTTTTCATT
TTTGTTGTGGCTGTTGTTTTGTTTTCTTTAAAGAATGTTCTTCTAGGCTG
GGGATACAACTGAGTGTTNGTCCTGAATTCATAAAGCCCTGCGNTCCATC
CTTGATGTCTTATAAATAAAGTATGATGGTGCGCATCTGCAATCCCAGCA
CTTGGGGGACAGAGGCAGGAGTTCAGGGTTATGCTCAGCTACACAGTGAG
TCTGAGGCTAGTCTGCTCTATATGAGACTCACTCTCACAAACAAGACTAG
ATTATTCCCTGATGTTCGTGATCACGTTCAGAATGTATGCCCCCCCTGAC
TAAGACAGGTGTTATAAGCACAACGCGTTGCATTGCGTGTCCTGGTCTGC
ACTGCTTACTTTCCTTGTCTGATCCCTTGCCCTGTTGCATCCATGTCCTT
TTTTTTTTTTTTTTTTTTCCCCCTTCTTTTTTCCCCCATTTTTTTTTCCC
CCCTCTTTTCCCCTTTCTTTCTCCTCCATTTTCCCTTTGCCTTGTTTCTC
TCTG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACGTAACTAAGGGGTCCTATTATT
TGGCAATGTACCCGGTTCATTCTGAGGTTGTTCCAGGAGGCCCTTATCTC
AAAAATGTTCTTGGAACAGTCTTTAGTTGGGAGGGTTCGAACTCTAGGGT
GAGGAGTTCAGGAATGCATTCTGGGGTGAAGAGTTCAGGAGTGTTCTGGG
TATACTCTCTAGATGGGAGGGGTCGGGCTCTGGGGTGAGGAAGAGTTCAG
TAATTTTTTATTCTTCATTCCTCACTTCTTTTAGAAAATAGCTCTAATCT
TAGAGCGAGTTTTTTTCCTCTTGAAGGACCCGATATTGTTGCCTTAGTAC
CATAACCTGTACTGCATTTATCCTTTCTCTAATAAAAGCTACTAACTTAT
TACGGATGCAGGGGCCAAAAGTAAGCAAAAGCATAAGTGTAATTAAAGGT
CTTGCTATGGTGTATAGGACAGTGTTGAGCCTCGGGGACTTATTATTTCG
TTTTTTACACCTCCTTTTCCGCCTTTTTCCCTCTTTTTTACGGCCCCTTT
GTCCTTTCCTTGTTCCGGCCTTACTTCCCTGTTTCCCCCCGCACGGCCCC
TTTTACTTTTTTTTTTCCTTCCTTCACGGCCCCGCCCGTTCTCTCCTCCC
TTTACTGGATTCCCCCCTCCCTTTTCTCTTTTTTCCTCCCGCCCCCTTTT
TCTCCCTACTGCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_m08.b1 MSMg01no476_m08.b1 CHROMAT_FILE:
MSMg01no476_m08.b1 PHD_FILE: MSMg01no476_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:59 2005
         (244 letters)



>mm_chr7_19525034_19525677
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagctaaaacactacatttgtttcgagacagggtctctctattatgtagccctggctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 taagctaaaacactacatttgtttcgagacagggtctctctattatgtagccctggctgt 524

                                                                       
Query: 61  cctggaactcactatatagaccaggctcatagacatctatctcccaagtgctgggattaa 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cctgtaactcactatatagaccaggctcatagacatctatctcccaagtgctgggattaa 464

                                                                       
Query: 121 agtgtgtaccaccatacccacctttatgaaatatttttaagtggcttgtttttttcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agtgtgtaccaccatacccacctttatgaaatatttttaagtggcttgtttttttcattt 404

                                                                       
Query: 181 ttgttgtggctgttgttttgttttctttaaagaatgttcttctaggctggggatacaact 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttgttgtggttgttgttttgttttctttaaagaatgttcttctaggctggggatacaact 344

               
Query: 241 gagt 244
           ||||
Sbjct: 343 gagt 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |