BAC Information

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BAC

Clone NameMSMg01-476P18
Chromosome7 (Build37)
Map Location 131,310,799 - 131,311,081
singlet/doubletsinglet
Overlap geneEG628779
Upstream geneTnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG545999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476P18.T7 (MSMg01no476_p18.b1)MSMg01-476P18.TJ (MSMg01no476_p18.g1)
ACCAG558445AG558446
length767798
length of high quality
(start - end)
280 (325 - 604)239 (69 - 307)
definitionCHROMAT_FILE: MSMg01no476_p18.b1 PHD_FILE: MSMg01no476_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:16 2005CHROMAT_FILE: MSMg01no476_p18.g1 PHD_FILE: MSMg01no476_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATTTGGCGGCGCTATACGAGTCACTATTTCGAGAGCATCCGCGGGAAN
CCACTAATTTTCAGAACACTTCTTTCTGACTCCACTTAGAGTACTCTGTT
CTAGTCATACTGAGCTCTTTTCATTGGTAAAACTAATATCAGCACATTCA
TATTATAATATCAACAGAGAAATCTGATAATGGAAGAACATAAACAGACA
AGAAACGAACATCTATAATCCCAGTGCCCGGGAGACACAGGCAGGAATAT
CACAGGTTCAACATCAGCCTGGGCTACAGAATGAGACCAGAATGTCTCCA
AACTTTTTAAAAAGCTTTTTATTAAACAACACAAATAAAGGGTCTAACAC
AGAGACTAGAATTTAATAAATAGCAAGGGACAGATTATCGGGTCTTACTT
TCCTCATTAATCTAATAACACAGATAATAAAGTTTCTATAGAGTTGATTG
TGCATTGATACAAGACTTGCAATGGATATAGACTCAATAAACATCACCTC
TTCCACTGTTATTGAATAAGGATTTCACACACATTTGATGCATGTCCAGG
ATCCCACAACTGACCTGGTTAGTCAACACCTTCTGAGCTTCTCTGTAACT
ACTTACCAAATAGAAATAGTCACCCCCACTGAAAATGATGTGTCAGTCAA
TCATAGAGATGTCTTGATGCCAGAAAGTATGAGTCAGATTTCTGAACCTG
CAATATGCCCTGTCTCTGAGAACACCCTAGCTTATGGAAAACATTAATTC
CCTGACGCCCATTTTCN
GCAGTGTGTAGGCTGGCGGCGCCTGGTTTCATACTATGAGGTGACCTATA
GAAGGTTTCGGAAATTCTGTGTTTAGCTCTGTACCCCATTTTTAATTGGG
TTATTTGGGTTGTTGCTATCTAATTTCTTGAGCTCTTTATATATTTTGGA
TATTAATCCTTTGTCAGATATAAAGTTGGTGAAGATCTTTTCCCAATCTG
TGGGCTGCCTTTTTGTCCTGTTGACAGTGTACTTTGCCCTACCGTTTCTT
TTCAGTTGGATGAGGTCCCATTTATCAATTGTTTATCTTAGATTCTGAGC
CATTGGTGTTCTTTCTCGTGTATTGTCCCCTGTACAATGCATTCAAGGCT
ATTTTCCACTTTCTTTTGCATTAGATTTAGTATATCAAGTTTTATGTTGA
GGTCTTTGATCCACTTGTACTCGCGTTCTGCGCACTTTGATCCCTACACA
TTTATTCTTCTACCTGCTGATATCTAGTTAGACCCGCACCATCCGTTGAC
GATGTTTTCCCCCATTGCTATCTCTTGACTCTCATTGTCAAAAATCCCGT
CTCCTTACCGCGTATGACGTTTACTTTTACCTCATCTTCCCTTTCCTTCC
CTCTCCCTCCCCCGCCTTCCCTTTTTTTATTCCATTTTCCCTGTACGCCC
CCTTCTATTTTTTTTTTTTCTACCTCACCACACTATATTACATTACTTCT
TTTTTCTCCCTCCCTTTTCTCTCTCTTCTCTCCCCCCCCTTTTTTTCCTT
CTTTCTCCTCCTCTTCCTCGCCCCCTTTTTTTTCTTCCTCTCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_p18.b1 MSMg01no476_p18.b1 CHROMAT_FILE:
MSMg01no476_p18.b1 PHD_FILE: MSMg01no476_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:16 2005
         (280 letters)



>mm_chr7_131310599_131311281
          Length = 683

 Score =  474 bits (245), Expect = e-138
 Identities = 273/283 (96%), Gaps = 3/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaacacaaataaagggtctaacacagagactagaatttaataaatagcaagggacaga 60
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 483 aacaacacaaataaaaggtctaacacagagacaagaatttaataaatagcaagggacaga 424

                                                                       
Query: 61  ttatc--gggtcttactttcctcattaatctaataacacagataataaagtttctataga 118
           |||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 423 ttatcctgggtcttactttcctcatttatctaataacacagataataaagtttctataga 364

                                                                       
Query: 119 gtt-gattgtgcattgatacaagacttgcaatggatatagactcaataaacatcacctct 177
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gttagatcgtgcattgatacaagacttgcaatggatatagactcaataaacatcacctct 304

                                                                       
Query: 178 tccactgttattgaataaggatttcacacacatttgatgcatgtccaggatcccacaact 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tccactgttattgaataaggatttcacacacatttgatgcatgtccaggatcccacaact 244

                                                      
Query: 238 gacctggttagtcaacaccttctgagcttctctgtaactactt 280
           |||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 243 gacctggttagttagcacattctgagcttctctgtaactactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 683
Length adjustment: 9
Effective length of query: 271
Effective length of database: 674
Effective search space:   182654
Effective search space used:   182654
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)