BAC Information

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BAC

Clone NameMSMg01-477B20
Chromosome7 (Build37)
Map Location 123,364,498 - 123,365,134
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7
Downstream geneRps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477B20.T7 (MSMg01no477_b20.b1)MSMg01-477B20.TJ (MSMg01no477_b20.g1)
ACCAG558544
length742769
length of high quality
(start - end)
---645 (77 - 721)
definitionCHROMAT_FILE: MSMg01no477_b20.b1 PHD_FILE: MSMg01no477_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:27 2005CHROMAT_FILE: MSMg01no477_b20.g1 PHD_FILE: MSMg01no477_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACATCCGCGGXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGCTTTGGCTTCCCTCAATAG
ACTGTGTATTCAGGATATGTAAGCCAGATAAACCTATTCTCTACACGTTG
TTTGTGGTCATGGTGCTTCATCGAAGCAACAGGGACAGAGTTTGAGGTCA
TGGTAAAAAGCAAAAGGAGATTCCAGCTTCTCTGTCCACTCCTTTACCAG
GCCTCCACACAAGAACTGGGGCCCTTTTATGTCTTTGCCTTTCCCCCCTT
GAGATGTTCTAGGGATCAAAGACAATCATGTGTGTGTTGTGTGTACTCTG
GTAAAACTCCACCAGTTTAAGTTTAAGTTACTGAGAGCAAGACTGGTTCC
CAAGACCTACAGAGCAGCTGCAGCAGCCCCCATGTCCTTCCTGACCTACC
CCACCCTCAGGCACAGCAGCTGGAAGGTGGAGATGTCACACCAGAGCCTT
AGAACCTGGAGTGCCTGGCCCTTCTCACTCTGCCCTGTGACGCCTCAGAT
ATCCTGCGCCTCTGGGAAGACTACACACTAGCTGAGTCTGCTCCAAGCGC
ACCTAGGAGCTTCTCTGCAGGCTAGTACTGGTTTCTCACCTAACTCTCTG
TGAAAGCCAGCAACATGGGGGAAAAAAGGTGTCTGCGACTTGGTTTTCAT
AAAAGATTTGACAGCCCTTCAGAAACTCACTGGTAAACAAACAAACCAAC
AAACAGAGCACACTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_b20.g1 MSMg01no477_b20.g1 CHROMAT_FILE:
MSMg01no477_b20.g1 PHD_FILE: MSMg01no477_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:27 2005
         (645 letters)



>mm_chr7_123364298_123365342
          Length = 1045

 Score = 1156 bits (598), Expect = 0.0
 Identities = 630/646 (97%), Gaps = 10/646 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagctttggcttccctcaatagactgtgtattcaggatatgtaagccagataaaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagctttggcttccctcaatagactgtgtattcaggatatgtaagccagataaaccta 260

                                                                       
Query: 61  ttctctacacgttgtttgtggtcatggtgcttcatcgaagcaacagggacagagtttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctctacacgttgtttgtggtcatggtgcttcatcgaagcaacagggacagagtttgag 320

                                                                       
Query: 121 gtcatggtaaaaagcaaaaggagattccagcttctctgtccactcctttaccaggcctcc 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcacggtaaaaagcaaaaggagattccagcttctctgtccactcctttaccaggcctcc 380

                                                                       
Query: 181 acacaagaactggggcccttttatgtctttgcctttccccccttgagatgttctagggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaagaactggggcccttttatgtctttgcctttccccccttgagatgttctagggat 440

                                                                       
Query: 241 caaagacaatcatgtgtgtgttgtgtgtactctggtaaaactccacc-agtttaagttta 299
           ||||||||||||||||||||||||||||||||||||||||||||||| |         ||
Sbjct: 441 caaagacaatcatgtgtgtgttgtgtgtactctggtaaaactccaccca---------ta 491

                                                                       
Query: 300 agttactgagagcaagactggttcccaagacctacagagcagctgcagcagcccccatgt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agttactgagagcaagactggttcccaagacctacagagcagctgcagcagcccccatgt 551

                                                                       
Query: 360 ccttcctgacctaccccaccctcaggcacagcagctggaaggtggagatgtcacaccaga 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 552 ccttcctgacctaccccaccctcaggcacagcagctggaaggtggagatgtcacgccaga 611

                                                                       
Query: 420 gccttagaacctggagtgcctggcccttctcactctgccctgtgacgcctcagatatcct 479
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gccttagaacctagagtgcctggcccttctcactctgccctgtgacgcctcagatatcct 671

                                                                       
Query: 480 gcgcctctgggaagactacacactagctgagtctgctccaagcgcacctaggagcttctc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gcgcctctgggaagactacacactagctgagtctgctccaagcgcacctaggagcttctc 731

                                                                       
Query: 540 tgcaggctagtactggtttctcacctaactctctgtgaaagccagcaacatgggggaaaa 599
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 732 tgcaggctagtactggcttctcacctaattctctgtgaaagccagcaacatgggggaaaa 791

                                                         
Query: 600 aaggtgtctgcgacttggttttcataaaagatttgacagcccttca 645
           ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 792 aaggtgtctgcaacttggttttcataaaagatttgacagcccttca 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)