Query= MSMg01no477_m04.b1 MSMg01no477_m04.b1 CHROMAT_FILE:
MSMg01no477_m04.b1 PHD_FILE: MSMg01no477_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:17 2005
(666 letters)
>mm_chr7_77595374_77596437
Length = 1064
Score = 1193 bits (617), Expect = 0.0
Identities = 651/663 (98%), Gaps = 3/663 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtgcagtggattatttgtagacaaaaattgtactagcacacatgtctggaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgtgcagtggattatttgtagacaaaaattgtactagcacacatgtctggaaat 263
Query: 65 atgtgtacacacacacagaggcagtaataaaagctaagtggaatgttaatattatttaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgtgtacacacacacagaggcagtaataaaagctaagtggaatgttaatattatttaag 323
Query: 125 atactgtgtttgtgtatagtgccatcaacaaatgttggtttacttaacatttctactaaa 184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atactgtgtttgtgtatggtgccatcaacaaatgttggtttacttaacatttctactaaa 383
Query: 185 ctg-ggctcttgggttggggatatggttcagttagccaagcctttgccaagcatgtgtga 243
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 ctgctgctcttgggttggggatatggctcagttagccaagcctttgccaagcatgtgtga 443
Query: 244 atcattagaaccatatcaaaccagcatacctgtacatgcctgcaattgcaatactcgaga 303
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atccctagaaccatatcaaaccagcatacctgtacatgcctgcaattgcaatactcgaga 503
Query: 304 agtgggagcaggagactagaaggtcaaggtcatcctcaactaatcattgagtcaaggcct 363
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 ggtgggagcaggagactaaaaggtcaaggccatcctcaactaatcattgagtcaaggcct 563
Query: 364 gggataggggagaccctctctaaatcaaagcaaaacaactagcatcaaataaacagaata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gggataggggagaccctctctaaatcaaagcaaaacaactagcatcaaataaacagaata 623
Query: 424 aaacaaaattcttaaaagccataaccccaacctatttccagccactttaaggagtctgag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaacaaaattcttaaaagccataaccccaacctatttccagccactttaaggagtctgag 683
Query: 484 aatcagtagtaacgtgtaatggtcctcgataatgaatgttttccccaagatgtaacctgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatcagtagtaacgtgtaatggtcctcgataatgaatgttttccccaagatgtaacctgg 743
Query: 544 ctttctggagaacatcatgaaaatgtgacatgggatcctgaaggtcaccatgactcttgt 603
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 744 ctttctggagaacatcatgaaaatg--acatgggatcctgaaggtcaccatgcctcttgt 801
Query: 604 ctatccaactcctctccacgctgagttcagtcctcggctgtgatttgaacaagtgcagtg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctatccaactcctctccacgctgagttcagtcctcggctgtgatttgaacaagtgcagtg 861
Query: 664 cag 666
|||
Sbjct: 862 cag 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1064
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1054
Effective search space: 691424
Effective search space used: 691424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_m04.g1 MSMg01no477_m04.g1 CHROMAT_FILE:
MSMg01no477_m04.g1 PHD_FILE: MSMg01no477_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:18 2005
(654 letters)
>mm_chr7_77749964_77751018
Length = 1055
Score = 994 bits (514), Expect = 0.0
Identities = 575/606 (94%), Gaps = 20/606 (3%)
Strand = Plus / Minus
Query: 1 gaaaagtgtagatcatatatagttttaagcctgaaaattaaaattaaagcctgcttcaac 60
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 600 gaaaaatgtagatcatatatagttttaagcctg------aaaattaaagcctgcttcaac 547
Query: 61 acttctctgcttattatctttctagaatttgttcaaaaataggaaacat----------c 110
|||||||| |||| |||||||||||||||||||||||||||||||||| |
Sbjct: 546 gcttctctgtttatcatctttctagaatttgttcaaaaataggaaacatcacacacacac 487
Query: 111 acacacacacacacacacacacacacacacacact---ttctgggacttgag-aaaaata 166
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 486 acacacacacacacacacacacacacacacacactcacttctgggacttgagaaaaaata 427
Query: 167 atggatacatcaaacttgagtgtttgcatttaaaatttccaagtactttccatattgaat 226
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 426 atggatacatcaaacttgagtgtttgcatttaaaatttccaagtactttccttattgaat 367
Query: 227 aaaattacccatttttatgacttatttttcattgttagcatgtgtatatatgcatgtctt 286
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 366 aaaattacccatttttatgacttatttttaattgttagcatgtgtatatatgcatgtctt 307
Query: 287 agcggtagggtgggcttatgtgtacatgaggctgggagagggcttccctggagctggaat 346
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 306 agctgtagggtgggcttatgtgtacatgaggttgggagagggcttccctggagctggaat 247
Query: 347 tactagttgtggttagctgcatggtgtgagtgctgaaaaccaaactggagtcctctacaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tactagttgtggttagctgcatggtgtgagtgctgaaaaccaaactggagtcctctacaa 187
Query: 407 gagcaacacatgctcttgactgctgagccatctcttcagaaacccagaaccctcaaaaag 466
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 186 gagcaacacatgctcttgactgctgagccatctcttcagaaacctagaaccctcaaaaag 127
Query: 467 gaaatattcggagcatcagtgtaagagaaactgctgcaaaggcttgatcagccatgcctt 526
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 126 gaaatattcggagcatcagtgtaagagaaactgctacaaaggcttgatcagccatgcctt 67
Query: 527 gtaggtgtgtatccgtcacctctctcatcccattcaaagatctaggtgaacgtctgtgaa 586
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 66 gtaggtgtgtatccgtcacctctctcatcccattcaaagttctaggtgaacgtctgtgaa 7
Query: 587 agggtc 592
||||||
Sbjct: 6 agggtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space: 672980
Effective search space used: 672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
