BAC Information

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BAC

Clone NameMSMg01-478A03
Chromosome7 (Build37)
Map Location 117,360,403 - 117,361,026
singlet/doubletsinglet
Overlap genenone
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1
Downstream geneSwap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478A03.T7 (MSMg01no478_a03.b1)MSMg01-478A03.TJ (MSMg01no478_a03.g1)
ACCAG559225AG559226
length746741
length of high quality
(start - end)
184 (59 - 242)648 (65 - 712)
definitionCHROMAT_FILE: MSMg01no478_a03.b1 PHD_FILE: MSMg01no478_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:37 2005CHROMAT_FILE: MSMg01no478_a03.g1 PHD_FILE: MSMg01no478_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGCTAAACGACTCACNATCCAAAGAGGATCCGCGGAATTCAATAAC
TACTAACCACATGGTGGTAATAGGATCTGATGCCCTCTTCTGGCATGCTG
TATATATACAGTATATACAGTTAGAGCACTGAAGCATTAAATAAAATCTT
TTTTTAAATTCCAGTGTCATATCCTAATTTTTTTTTCGTTCATTCATTTT
ATTTTATTGAGTGTATGGTGGAAGGGGGGAGGGAGGGAGGATCTTTCCCC
TGCTGGCTAAAATCTGTGCCTTGGGAAGGAAGGCAGGCAAACGGGCCAGC
GCTTTTGTTATTTTATGGNGGNGCTTTATCCAAAAGACTTTGGTTGTGGT
CTCCCATTTTATTCTCAAGGGGCAGTCTGGGAACCCTCTTGCAGAAGGCA
GGACGAACTGGTTGATCTCCTTATCTGTCTCACGATGAATTGTGAATTCT
GCTGCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGTGACGTC
CCTATGAACGCTTTGGCCGGCACTAGCCAGTTATCTCTGTGGCAACTTTT
CTGACACCTCCTGCTACATTGATCCAACATGCCAAAAGTTGTTCCCCTTT
GTACACCCATATTCTAATTTTTAAGGGTCCAAACGCCCTGTGTTTTTTTT
TTATTAAACCCCTGGAAAAAAAGGGACGGCGGGATGTTGTCCTCGGCCAT
GGTTATCCCCCGGCCCATAACCTTATTCCATACTGCCCGGCAATAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCTACCTCCCAGATGTCCCACCTTCTATTCTACC
CTTTCCTATAGGCCACGGGTTTTTTAATGGACAGGTGATTCATCCATGCA
ATACACAAGACAGTCTTTCTACAGAGGTGAAAGAAGAAGGTAAGGGAAAG
AAAGAATAAAGCTGGTGATAGTGTCATCCCCAAAATTCACATGCTGAAGT
CCTAGCCCCCAATACTTCAGAGTAAAATCACATTTGGAGATGGGGTCTTT
TTAGAGATAATTCTGATCTGATATGATTGGTGTCCACATAAACAGGACGA
ATTTGGACATAAACATGCCCATGGGAAGAGCACCATGCAAACAGAGTCAC
ATGCTTCTACATGCTAAGGAACACTAAGGAGTTGAGCAAACAGCCAGTAG
CTGAAAGAAGGCAGACGACAGAGTCACATGCTTCTACATGCTAAGGAACA
CTAAGGAGTTGAGCAAACAGCCAGTAGCTGAAAGAAGGCAGGCGACAGAG
TCACATGCTTCTACATGCTAAGGAACACTAAGGAGCTGAGCAAACAGCCC
ATAGCTGAAAGAGAGACATGGAATACATCCTTCCTCACAGTCCTTAGCTA
GAACCAAGCCTGCAACAACCTGGTATTAGACACTTCCCACCACCTATACC
CACCACCCACTTCCATTCCCCCAGCCCCACCCTTTATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_a03.g1 MSMg01no478_a03.g1 CHROMAT_FILE:
MSMg01no478_a03.g1 PHD_FILE: MSMg01no478_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:37 2005
         (648 letters)



>mm_chr7_117359979_117361026
          Length = 1048

 Score = 1168 bits (604), Expect = 0.0
 Identities = 619/624 (99%)
 Strand = Plus / Minus

                                                                        
Query: 25   ttctattctaccctttcctataggccacgggttttttaatggacaggtgattcatccatg 84
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1048 ttctattctaccctttcctataggccacgggttttttaatggacaggtgatgcatccatg 989

                                                                        
Query: 85   caatacacaagacagtctttctacagaggtgaaagaagaaggtaagggaaagaaagaata 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  caatacacaagacagtctttctacagaggtgaaagaagaaggtaagggaaagaaagaata 929

                                                                        
Query: 145  aagctggtgatagtgtcatccccaaaattcacatgctgaagtcctagcccccaatacttc 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  aagctggtgatagtgtcatccccaaaattcacatgctgaagtcctagcccccaatacttc 869

                                                                        
Query: 205  agagtaaaatcacatttggagatggggtctttttagagataattctgatctgatatgatt 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  agagtaaaatcacatttggagatggggtctttttagagataattctgatctgatatgatt 809

                                                                        
Query: 265  ggtgtccacataaacaggacgaatttggacataaacatgcccatgggaagagcaccatgc 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  ggtgtccacataaacaggacgaatttggacataaacatgcccatgggaagagcaccatgc 749

                                                                        
Query: 325  aaacagagtcacatgcttctacatgctaaggaacactaaggagttgagcaaacagccagt 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  aaacagagtcacatgcttctacatgctaaggaacactaaggagttgagcaaacagccagt 689

                                                                        
Query: 385  agctgaaagaaggcagacgacagagtcacatgcttctacatgctaaggaacactaaggag 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  agctgaaagaaggcagacgacagagtcacatgcttctacatgctaaggaacactaaggag 629

                                                                        
Query: 445  ttgagcaaacagccagtagctgaaagaaggcaggcgacagagtcacatgcttctacatgc 504
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 628  ttgagcaaacagcccgtagctgaaaaaaggcaggcgacagagtcacatgcttctacatgc 569

                                                                        
Query: 505  taaggaacactaaggagctgagcaaacagcccatagctgaaagagagacatggaatacat 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  taaggaacactaaggagctgagcaaacagcccatagctgaaagagagacatggaatacat 509

                                                                        
Query: 565  ccttcctcacagtccttagctagaaccaagcctgcaacaacctggtattagacacttccc 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508  ccttcctcacagtccttagctagaaccaagcctgcaacaacctggtattagacacttccc 449

                                    
Query: 625  accacctatacccaccacccactt 648
            ||| |||| |||||||||||||||
Sbjct: 448  accgcctacacccaccacccactt 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)