Query= MSMg01no478_a20.b1 MSMg01no478_a20.b1 CHROMAT_FILE:
MSMg01no478_a20.b1 PHD_FILE: MSMg01no478_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:40 2005
(664 letters)
>mm_chr7_124380660_124381724
Length = 1065
Score = 886 bits (458), Expect = 0.0
Identities = 491/502 (97%), Gaps = 2/502 (0%)
Strand = Plus / Minus
Query: 165 tcagggctcccttagcatactcaaaactgggtgcccactcttagcactgcaaactgagta 224
||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||| |
Sbjct: 937 tcagggctcacttagcatactcaaagctgggcgcccacccttagcactgcaaactgagca 878
Query: 225 tggtggcacatgcctgccatcccagttctcaagaggttgagacaggaggatcagaagttc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tggtggcacatgcctgccatcccagttctcaagaggttgagacaggaggatcagaagttc 818
Query: 285 acagtaatcttctgtcagactagaatatgtaagaccctttctttaaaaaag-aaaaaaaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 817 acagtaatcttctgtcagactagaatatgtaagaccctttctttaaaaaagaaaaaaaaa 758
Query: 344 aagacatcaagaagtgcaaggtttggatagagcttattaaagctatccctaaatatctct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aagacatcaagaagtgcaaggtttggatagagcttattaaagctatccctaaatatctct 698
Query: 404 cctg-aaaaattgactagctttaagaatattgggtttgtttatgataccttcaaatattt 462
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 697 cctgaaaaaattaactagctttaagaatattgggcttgtttatgataccttcaaacattt 638
Query: 463 gtgccatgtactttgctcacaccagtcccctcttcccctctcagcctctctcctcctgct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gtgccatgtactttgctcacaccagtcccctcttcccctctcagcctctctcctcctgct 578
Query: 523 atcttggtcttcctcaacaatactctatgtaatttatgttcttgctcctttcacaaaaca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atcttggtcttcctcaacaatactctatgtaatttatgttcttgctcctttcacaaaaca 518
Query: 583 cctcacctttggggcataaggagggaggacttgcttattgcggttttcaagggtacagtt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cctcacctttggggcataaggagggaggacttgcttattgcggttttcaagggtacagtt 458
Query: 643 cattacagcaggggagtcatgg 664
|||||||||| |||||||||||
Sbjct: 457 cattacagcatgggagtcatgg 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1065
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1055
Effective search space: 689970
Effective search space used: 689970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_a20.g1 MSMg01no478_a20.g1 CHROMAT_FILE:
MSMg01no478_a20.g1 PHD_FILE: MSMg01no478_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:40 2005
(655 letters)
>mm_chr7_124194744_124195798
Length = 1055
Score = 1210 bits (626), Expect = 0.0
Identities = 645/656 (98%), Gaps = 9/656 (1%)
Strand = Plus / Plus
Query: 1 atacccatgacagggctagaaagatacctggacacagtagaccttccaagagatgtcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacccatgacagggctagaaagatacctggacacagtagaccttccaagagatgtcatt 260
Query: 61 ttgtaaatgtgggtagaaaggctccatgtactaacagttgttggtgccaatgcagataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaaatgtgggtagaaaggctccatgtactaacagttgttggtgccaatgcagataaa 320
Query: 121 atttgtataaacaaacatgatctctgtctccatggagctttgcagactggtgatgtgaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgtataaacaaacatgatctctgtctccatggagctttgcagactggtgatgtgaca 380
Query: 181 gaaactacaaggacaataccagtgcactgctgagagggtgcaggaggaagagacaggtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaactacaaggacaataccagtgcactgctgagagggtgcaggaggaagagacaggtcc 440
Query: 241 ttctaaagaacaaacaaacaaacaaacaaacaaacaaacaaacaaactgtgagtatgtgt 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaaag--------aacaaacaaacaaacaaacaaacaaacaaactgtgagtatgtgt 492
Query: 301 ttctttataaagaaatctagtttgctcattgttttctgtttcctgttggttttctaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttctttataaagaaatctagtttgctcattgttttctgtttcctgttggttttctaaagc 552
Query: 361 aagag-aaaaaaaaagggcatagagttgggtcagaggatctgggaggatttggaggagag 419
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagagaaaaaaaaaagggcacagagttgggtcagaggatctgggaggatttggaggagag 612
Query: 420 ggaactgtgatcagaatttattgtatggaaacaaaatacaataaaaatgcacatatacaa 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggaactgtgatcagaatatattgtatggaaacaaaatacaataaaaatgcacatatacaa 672
Query: 480 acttgccaagccctacagaggtgtggttgctgggggtcaaactcaggtattcatgatgaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 acttgccaagccctacagaggtgtggttgctgggggtcaaactcaggtattcatgatgaa 732
Query: 540 caaacactttactaattgagccatctccttagcccacatgacttccttgttctgcatcct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 caaacactttactaattgagccatctccttagcccacatgacttccttgttctgcatcct 792
Query: 600 gtatagacactagggagaactatgagcatcttttcatggggtgattccccacccca 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gtatagacactagggagaactatgagcatcttttcatggggtgattccccacccca 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
