BAC Information

Click to search

BAC

Clone NameMSMg01-479C17
Chromosome7 (Build37)
Map Location 51,909,241 - 51,909,478
singlet/doubletsinglet
Overlap geneMyh14
Upstream geneSiglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3
Downstream gene1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479C17.T7 (MSMg01no479_c17.b1)MSMg01-479C17.TJ (MSMg01no479_c17.g1)
ACCAG560113AG560114
length7841,160
length of high quality
(start - end)		244 (74 - 317)---
definitionCHROMAT_FILE: MSMg01no479_c17.b1 PHD_FILE: MSMg01no479_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:04 2005CHROMAT_FILE: MSMg01no479_c17.g1 PHD_FILE: MSMg01no479_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAGAGAGGGGCGGAAT
TCATTATGCTGCATAAAAAGATCTGCGTTCCAAATACTTAGACTTCCGGC
AGCAGGCTCCTTGACCTGCCTCCCCCACCAGATCTATTGGAGAAGTCCCG
GGCCATCAGACAGGCCAAGGATGAATGCAGCTTCCATATCTTCTACCAGC
TGCTAGGGGGCGCTGGGGAGCAGCTAAAAGGTTAGTGTCACTCTTTCCCA
GCCTGCTTTGCCCTGGGGTGGTTGAGAAACATAATATCTCCCACTCTCCA
CACCCTCGCCATCCCTCTTTATTTGAGTCTGTTGTGCCCAGTCCTGCCAT
CCCTATGATGTGTGGGAAGAGCGCAGAAGTGGAGCTGCGCAGCTCTGGGC
TCCTGTCGTGTCCCCAGCCCTGCTTTTTTAAATTTTTTTTAAAGATTTAT
TTATTATATGTAAGTAACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGA
GTCATATCTCCTTACGGATGGTTGTGAGCTACCATGTGGTTGCTAGGATT
TTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCC
ATCTCTCCAGCCCAAGCTCTGCTTTCTACCCTCTGCTTCCAGCTGCCTTC
TGGCTTTCGCTCCTGCCTGCGGCATCTGCTCTGTTCCTGCACCCCTGTTC
CTCCTGGACCTATGGGGGCTCTGCCTTGTTGTGGCCTCTCGCAATTTCAT
GCTTCCAGTTGACCTTACTGTGTGCCGTTTGCGC

CACTATTTGCGTGTCGGCCACGGGACGGGACGCCCTGGTTTACACAAAAC
ATAGGGGNGNNNGACACNNACTAGAAATTTTTTCCCCCCACACATAGTAC
AGAGGCGTAAGGCCACGCGGCATACCATGGATGAAACGCTTTCTCACAAA
GCTTACGCTATTGTGCCACATCTCTCCTGCCTCCCTTGTGCTCATCTTTA
CGGTCACACCATATTCCCGTCACAGGCGGTCACGGCAGCACACACCTGGT
CGCGCCAATGTCCGCTGCATATGGTGCGTATAGCCGCTCACGCGTCTTCG
CTGTGGTTCTTAACATATATCCTCTTTACCATGCGTCAACCGGGGTGCGC
TATGGCGGTGCCGGGTTATGCGGTATCATGATGCAGGTACTCCATTCACT
TTCCTCCCCTCCTTCGATTTGCCGCTGCGCATTCTCGCCTTACTAATCGC
TCTTCACTTACGCTTTCGTTTCTCTTATTCCTACGTCATTATCCACTCGT
TCCATCGCGCTTCCGTCGGTCGCATTTTGCTTATTTCCATTCCCTTCCCC
CACCCTCCATTTCCATCACCACTGACCACCTTACTCATTTTATACCCACA
TATACCTCATGCTTTACCCCCCACTTATTCTCGCCCTCTATGACCCGCCT
TCCACCGNACCACTTCCTATACGCGCACCAACTTCGTATCCCTTCCCATC
CCGTTATTCTATCGCCTTTACCGCCTTTTCGTTTTCCTTTTCCTACCTTT
ATCTCNCTCGTTGCCGCTATTTCCTATAACCTTATCCTATATCCGACCTT
CACCTCTCTCACTACCATTCTATTTTCCTTAATCTCCGCTTCACCCATTC
GCCTGAATCTTTATCAATACCCCCGCCCTCTTCGACTTCACGCTGTCCGC
ATACGCACACACATCTCTCGCACTATCCCTCTTCTCACCTCACTATTATC
TGTACTGACCGCCTTCGCCACACTCTCTATCGTTTTTTACCTCCACCACC
ACGCGACTCGCTCTCCGACTNTAATCTATATACTCACCACTCCCCTCCCT
AATATATTTATTCCCCTCCATTCTGTTCAACCCCCGCCTATATATCATCC
ACACCTTCCGCCGTTTTACCGCGTCATACCGGAGCATATACTATCACTTT
CATCCACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_c17.b1 MSMg01no479_c17.b1 CHROMAT_FILE:
MSMg01no479_c17.b1 PHD_FILE: MSMg01no479_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:04 2005
         (244 letters)



>mm_chr7_51909037_51909680
          Length = 644

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ttccaaatacttagacttccggcagcaggctccttgacctgcctcccccaccagatctat 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 442 ttccaaatacttagacttccggcagcaggctccttgacctgcctcccccaccagatctgt 383

                                                                       
Query: 65  tggagaagtcccgggccatcagacaggccaaggatgaatgcagcttccatatcttctacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggagaagtcccgggccatcagacaggccaaggatgaatgcagcttccatatcttctacc 323

                                                                       
Query: 125 agctgctagggggcgctggggagcagctaaaaggttagtgtcactctttcccagcctgct 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 322 agctgctagggggcgctggggagcagctaaaaggtcagtgtcactctttcccagcctgct 263

                                                                     
Query: 185 ttgccctggggtggttgagaaacataatatctcccactctccacaccctcgccatccc 242
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 262 ttgccctggggtggttgagaaacataagatctcccactctccacaccctcgccatccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |