BAC Information

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BAC

Clone NameMSMg01-480P13
Chromosome7 (Build37)
Map Location 75,908,337 - 75,908,857
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480P13.T7 (MSMg01no480_p13.b1)MSMg01-480P13.TJ (MSMg01no480_p13.g1)
ACCAG561486AG561487
length712707
length of high quality
(start - end)
379 (330 - 708)521 (87 - 607)
definitionCHROMAT_FILE: MSMg01no480_p13.b1 PHD_FILE: MSMg01no480_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:26 2005CHROMAT_FILE: MSMg01no480_p13.g1 PHD_FILE: MSMg01no480_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGCACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACAGAGC
CGCNGGAATCCAGTATTTCCAAAAAAAGGGTAGCTAATGGAGTCTAATGG
AAAAACTAGGTTTCCTACATTGATTCCGTCTGCAGCAAGAGAAGGCTTGA
CTCTTGCTGCGAAGCATATCCCTCCCAGATTAAAACATCCCATCCTGCAG
GGAAGCTCCTGAAACCAGAAAGTCAACAACTCAAAACAGAAGGAAGTTGC
TGATTCTAACCAGACTCTTTAGTACCTTCCCCCTGTAAGAGTGGACAGTA
AAGAGGGCTCAGAGTCGCTCNCATCATTCCCAGTATCTGAAGGAAGCAGA
GAGGAACCAATCTGCAAAGAAGACGTTTATATAAACCCTGCCTCCTAAGC
AGACCACTCAAGTAGCCTGGAAGGAGCAGAAATCAGCCCAGCTTTTTGGA
AAAGGTTCAAACTAACTGAGCCAGCTAGAAAAGACACTTGCTACCTGTTG
AGTTGCCTGAATGTTGTGCAGTTTGTTCCATGGTCCCATCTTTTGTGAGC
TGTCAATCATGCTAGGGTGATGCAACTGTCTTTGAGTCATCTCTGTTCCT
GTAACTCCTTCACACATATCCCTGTTGGAAACCCTAATCAAACTCATTGT
TCACAAAGCTGGATTTTGATAGTGTTTTTACTCTGGCCTGCCATTGGTTC
CATATCTGGNGT
NCCCATGAAGTGGGAGGCCTGGGGNCGCCTGTTTCCGACGGGGGGNGAAC
NANAGAAGTAACAAAAACGGGGTTNNCAGCCNGGANTGCCTTCNTTATTT
CATTCAGCTGTATATCCTTATTTTCTTGTATTCAATTATGAATTTATTTT
TTTCTCTTTAATTTCATTATGGTATTTTTTCCACTTTAAGCCCCTTTAAT
TCTTTGATTATGTTTACAGTTGTTCATTTAAATTTTGTGTGCTGTGTGTT
ATCTGGACAATTGCCATTGGAGCACCTTTTCCTAGGCCTTTGGAGAGGGC
ATAATGTCTTTTTTTTCTTAGCCCTTTAGATGTTTTGTAATTTTGTAGTG
AGAACAAGGCATGTGGGTTTATTTAGTTTTCTGTGTGCCTGATATGAATT
TTCAACTTGCCTCTATGGAGTAGAACTTTGGTCCTCTTTTTCTGGTTACT
CAAATGTAGTTGATTTTAGATAAGATAGAAGGAGCTTTTATGTTAATCTT
TCTGATACTTGGTGTTGATTTTTATTTGGCGTGTGGATGATTCTAATTCA
GCAAGAACTTTTAAGTGTCTTGGGGTGTGGGAAGATTCCTTGGATTAGGT
CCAAGAAAGCTGAGTGGTGTAGCTTTAAGCTGTGCATTATTATCGTTATC
AAGGAAAGGCAGAGCAGGATGAGAGACTGTGTAGTCACCTAGAAAGCACA
TGACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_p13.g1 MSMg01no480_p13.g1 CHROMAT_FILE:
MSMg01no480_p13.g1 PHD_FILE: MSMg01no480_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:26 2005
         (521 letters)



>mm_chr7_75908137_75909057
          Length = 921

 Score =  948 bits (490), Expect = 0.0
 Identities = 513/521 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccttcnttatttcattcagctgtatatccttattttcttgtattcaattatgaattta 60
           ||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 201 tgccttctttatttcattcagctgtatatttttattttcttgtattcaattatgaattta 260

                                                                       
Query: 61  tttttttctctttaatttcattatggtattttttccactttaagcccctttaattctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttctctttaatttcattatggtattttttccactttaagcccctttaattctttg 320

                                                                       
Query: 121 attatgtttacagttgttcatttaaattttgtgtgctgtgtgttatctggacaattgcca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 attatgtttacagttgttcatttaaattttgtgtgctgtgggttatctggacaattgcca 380

                                                                       
Query: 181 ttggagcaccttttcctaggcctttggagagggcataatgtcttttttttcttagccctt 240
           |||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||
Sbjct: 381 ttggagcaccttttcctaggccttaggagagggcataatgtcttaaatttcttagccctt 440

                                                                       
Query: 241 tagatgttttgtaattttgtagtgagaacaaggcatgtgggtttatttagttttctgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagatgttttgtaattttgtagtgagaacaaggcatgtgggtttatttagttttctgtgt 500

                                                                       
Query: 301 gcctgatatgaattttcaacttgcctctatggagtagaactttggtcctctttttctggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctgatatgaattttcaacttgcctctatggagtagaactttggtcctctttttctggt 560

                                                                       
Query: 361 tactcaaatgtagttgattttagataagatagaaggagcttttatgttaatctttctgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactcaaatgtagttgattttagataagatagaaggagcttttatgttaatctttctgat 620

                                                                       
Query: 421 acttggtgttgatttttatttggcgtgtggatgattctaattcagcaagaacttttaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttggtgttgatttttatttggcgtgtggatgattctaattcagcaagaacttttaagt 680

                                                    
Query: 481 gtcttggggtgtgggaagattccttggattaggtccaagaa 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcttggggtgtgggaagattccttggattaggtccaagaa 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)