BAC Information

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BAC

Clone NameMSMg01-481C08
Chromosome7 (Build37)
Map Location 61,914,747 - 61,915,192
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668789, Mrps33p, LOC622146
Downstream geneLuzp2, LOC668796
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481C08.T7 (MSMg01no481_c08.b1)MSMg01-481C08.TJ (MSMg01no481_c08.g1)
ACCAG561620AG561621
length746752
length of high quality
(start - end)
602 (30 - 631)540 (66 - 605)
definitionCHROMAT_FILE: MSMg01no481_c08.b1 PHD_FILE: MSMg01no481_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:40 2005CHROMAT_FILE: MSMg01no481_c08.g1 PHD_FILE: MSMg01no481_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCTT
TGTTCAGTTCTCAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAG
TACACCCTCTTGAGTTCTTTATATATATTGGATATTAATCTCCTATCTGA
TTTTGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTATCT
TATTGACAGTTTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCC
CATTTGTCAATTCTCGATCTTACAACACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCTCCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGGG
CTCCTTAATTCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGAT
CAATTTGCATTCTTCCACATGTTAACCGCCAGTTGTGCCAGCACCATTTG
TTGAAAATGCTTTTTCCCACTGCATGGTTTTAGCTCCCTTGTCAAATATC
AAGTGACTATAGGTGTGTGGGTTCATAGTCTCACAAGAGAGAGCTCTATC
TGGGTCCTTTCAGCAAAATCTTGCTAGTGTGTGCAATGGTGTCAGCATTT
GGAAGCTAATTATGGGATGGATCCCTGGATATGGCAGTCTCTAGGTGGTC
CATCCTTTCATCACAGCTACAAACATTGTCTCTGTAACTCCTTCCATGGG
GTTTGTGTTCCCAATTCTAAGAAGGGGCAAAGTGTCCACACTTTGA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTCGCGAATTCCTAACGGGTGCAAAGGCTAGCTCTAATAATA
TTGCCTTCCTTTGGTTCCTTTCCCCTTACTACCTTGTCTAGCCTCATTAG
GAGAAGATGCACATACTCTAACTGCAACTTAATATGCCAAGGCTGGTTGA
TAAGCATCAGAAGCCTCCCTGTTTCTGAGGAAAAGGGGAGAAGAGGATGG
GGTGGCATGGGGGATTACTGGGAGGAGAAGAGGGAGGGAAACTGTGGTCA
GAATAAAAATAAGTAAATTAACTAATTAATTAACTAACTAATTAATTAAT
AGACTAATTTTTTTAAAAAAGGAAACAGTCCCCAGAAATCTAAGCATATT
TTCTTTGAGCATTATTTGACACTGAAAATTTGGAGCTTTTAAAATTCCTT
TATCTGTAACATGGTAACATTAGACCAGGTTTCCTTCTCATTTTTTCATT
CCTTGACAATGATTGTTAATATTAAGGAGAGGCAGCTCCTTGGGTGTATA
GAAAGGCTGCTCTTTGCTTTCTCTTAGTCTCTATATTCTCACAGCCTCAA
GCAGACTTCCTATGGCACCTAGCCCTCACTGGCACTCTCACTAGCCTTAA
GGCTTTACTGGGATACACAGCTCTGGTTGTGTCTAGAAGTTGTTTTCAGA
GACTTTTAATGCCTATGGGAAGCCTGGCCTTGAATGGGAGATATACACTC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_c08.g1 MSMg01no481_c08.g1 CHROMAT_FILE:
MSMg01no481_c08.g1 PHD_FILE: MSMg01no481_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:40 2005
         (540 letters)



>mm_chr7_61914253_61915192
          Length = 940

 Score =  839 bits (434), Expect = 0.0
 Identities = 443/446 (99%), Gaps = 1/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 96  acatactctaactgcaacttaatatgccaaggctggttgataagcatcagaagcctccct 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 acatactctaactgcaacttaatatgccaaggctggttgataagcatcagaagcctccct 881

                                                                       
Query: 156 gtttctgaggaaaaggggagaagaggatggggtggcatgggggattactgggaggagaag 215
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 880 gtttctgaggaaaaggggagaagaggatggggtgggatgggggattactgggaggagaag 821

                                                                       
Query: 216 agggagggaaactgtggtcagaataaaaataagtaaattaactaattaattaactaacta 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 agggagggaaactgtggtcagaataaaaataagtaaattaactaattaattaactaacta 761

                                                                       
Query: 276 attaattaatagactaa-tttttttaaaaaaggaaacagtccccagaaatctaagcatat 334
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 attaattaatagactaattttttttaaaaaaggaaacagtccccagaaatctaagcatat 701

                                                                       
Query: 335 tttctttgagcattatttgacactgaaaatttggagcttttaaaattcctttatctgtaa 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tttctttgagcattatttgacactgaaaatttggagcttttaaaattcctttatctgtaa 641

                                                                       
Query: 395 catggtaacattagaccaggtttccttctcattttttcattccttgacaatgattgttaa 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 catggtaacattagaccaggtttccttctcattttttcattccttgacaatgattgttaa 581

                                                                       
Query: 455 tattaaggagaggcagctccttgggtgtatagaaaggctgctctttgctttctcttagtc 514
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tattaaggagaggcagttccttgggtgtatagaaaggctgctctttgctttctcttagtc 521

                                     
Query: 515 tctatattctcacagcctcaagcaga 540
           ||||||||||||||||||||||||||
Sbjct: 520 tctatattctcacagcctcaagcaga 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)