BAC Information

Click to search

BAC

Clone NameMSMg01-482H12
Chromosome7 (Build37)
Map Location 92,682,570 - 92,683,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339
Downstream geneVmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482H12.T7 (MSMg01no482_h12.b1)MSMg01-482H12.TJ (MSMg01no482_h12.g1)
ACCAG562627AG562628
length729735
length of high quality
(start - end)		688 (39 - 726)620 (76 - 695)
definitionCHROMAT_FILE: MSMg01no482_h12.b1 PHD_FILE: MSMg01no482_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:23 2005CHROMAT_FILE: MSMg01no482_h12.g1 PHD_FILE: MSMg01no482_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TGTTCCTACCATGTTCCCCATCATCAAATTTGATTATTCGATACTTTATG
GCTATCATCCACATATAAGAGAATCAATACAATGCATGTATTTTGGGTTT
GTGTTACCTATGTTTGAATGATAATGTTATAGTTCCATGCATTTGCCTGC
AAACTTATGATGTCTGTGGTTTTAATAGTGGAGTACTATTACAATGTGTA
AATGATCCACATTTTCTGTATCCATTTTGGCCTGAGGGGCATGGTTTCTT
TCAAGTTCTGGCTACTATGAATTAATGTAGAAGAGCTTTTGTCCTTATGG
TATGATGAAAAATCTTTTATGTATAGTCCCAGGAGGGGTATAGTTATGTC
TGGTATGATATAGTGACTAATTCTACACCAGAATATGAAAGTACAAAACT
CCTGAGATGAGTAAGCTGGTTCACTGTCTGTCTTGAGTGTGCTCAAGGTA
TGCCTATTACCAGCATTGCAAATTTCATGGCCTTTATATGATGAGAGAGA
GGCCTTTTGACACTTCATGGCCACCATGTATATGAAGGCTAAGCAAGTAT
CTTACACAACATAAACATACTTAAGTTTATTAATGGTTTGGGTAATGGGA
GACATCAATTTGCCAGATTGCTTTGCAGAATAGAAATCTAGGGTTAAGTC
TTGACCTACCAAGGAGCTCTAATGGTGTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGGAATAATGAATGGCTG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATCCAA
ATCAAAACTACCCTGAGATTCCAACTCATACCAGTCAGAATGGCTAAGAT
GAAAAATTCAGGTTACAGCAGATGCTGGGGAGGATGTGTAGAAAGAGGAA
CACTCACACATTGTTAGTGGGATTGCAAGCCAGTACAACCACTATGGAAA
TCAGTCTGGTGGTTACTCAGAAAATTGGACATAGTACTAATGGAAGATCC
AGCAATTTATCTCTTGGGCATATACCCAGAAGATATTCCAACTTATAATA
AGGACACATGCTCCCCTATGTTCATACCTGTGTTATTTATAATAGCCAGA
AGCTATAAAGAACCCAGCTGTCCCTTAATAGAGGAATGGATACAGAAAAT
GTGGAACATTTACACAATGTAGTACTACCCAGCAATTTAAAAAAATGAAT
TCATGAAATTCTTAGGCAAATGGATGCATCTGTAAGATATCATCCTGAAT
GAGGTAACTCAACCTCAAAAGAACACACATGGCATGTACTCACTGATAAG
TGGGTATTAGCCCAGAATTTTAGAATATCCAAGATACAATTTGCAAAACA
AAACAAAACAAAACAAAACAAAAACAAAAACAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_h12.b1 MSMg01no482_h12.b1 CHROMAT_FILE:
MSMg01no482_h12.b1 PHD_FILE: MSMg01no482_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:23 2005
         (688 letters)



>mm_chr7_92682367_92683454
          Length = 1088

 Score = 1263 bits (653), Expect = 0.0
 Identities = 677/685 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactgttcctaccatgttccccatcatcaaatttgattattcgatactttatgg 63
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactggtcctaccatgttccccatcatcaaatttgattattcgatactttatgg 263

                                                                       
Query: 64  ctatcatccacatataagagaatcaatacaatgcatgtattttgggtttgtgttacctat 123
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaccatccacatataagagaatcaatacaatgcatgtattttgggtttgtgttacctat 323

                                                                       
Query: 124 gtttgaatgataatgttatagttccatgcatttgcctgcaaacttatgatgtctgtggtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtttgaatgataatgttatagttccatgcatttgcctgcaaacttatgatgtctgtggtt 383

                                                                       
Query: 184 ttaatagtggagtactattacaatgtgtaaatgatccacattttctgtatccattttggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaatagtggagtactattacaatgtgtaaatgatccacattttctgtatccattttggc 443

                                                                       
Query: 244 ctgaggggcatggtttctttcaagttctggctactatgaattaatgtagaagagcttttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgaggggcatggtttctttcaagttctggctactatgaattaatgtagaagagcttttg 503

                                                                       
Query: 304 tccttatggtatgatgaaaaatcttttatgtatagtcccaggaggggtatagttatgtct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccttatggtatgatgaaaaatcttttatgtatagtcccaggaggggtatagttatgtct 563

                                                                       
Query: 364 ggtatgatatagtgactaattctacaccagaatatgaaagtacaaaactcctgagatgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 ggtatgatatagtgactaattctacaccagaatatgaaagtacaaaactgctgagatgag 623

                                                                       
Query: 424 taagctggttcactgtctgtcttgagtgtgctcaaggtatgcctattaccagcattgcaa 483
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 624 taagctggttcactgtctgtcttgagtgcactcaaggtatgcctattaccagcattgcaa 683

                                                                       
Query: 484 atttcatggcctttatatgatgagagagaggccttttgacacttcatggccaccatgtat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atttcatggcctttatatgatgagagagaggccttttgacacttcatggccaccatgtat 743

                                                                       
Query: 544 atgaaggctaagcaagtatcttacacaacataaacatacttaagtttattaatggtttgg 603
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 744 atgaaggctaagcaagtatcttacacaacatgaacatacctaagtttattaatggtttgg 803

                                                                       
Query: 604 gtaatgggagacatcaatttgccagattgctttgcagaatagaaatctagggttaagtct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtaatgggagacatcaatttgccagattgctttgcagaatagaaatctagggttaagtct 863

                                    
Query: 664 tgacctaccaaggagctctaatggt 688
           ||| |||||||||||||||||||||
Sbjct: 864 tgatctaccaaggagctctaatggt 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |