Query= MSMg01no482_m12.b1 MSMg01no482_m12.b1 CHROMAT_FILE:
MSMg01no482_m12.b1 PHD_FILE: MSMg01no482_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:46 2005
(549 letters)
>mm_chr7_117499665_117500615
Length = 951
Score = 810 bits (419), Expect = 0.0
Identities = 454/469 (96%), Gaps = 8/469 (1%)
Strand = Plus / Minus
Query: 86 aaaacataccacagagagagagattaagatagtcttgaagtagtgcaagcaaactaagga 145
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaaacataccac--agagagagattaagatagtcttgaagtagtgcaagcaaactaagga 511
Query: 146 aaaaaagaaacattgtagcagcctagaacatggacattggttttagagaaaagcagtgga 205
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaaaaagaaacattgtatcagcctagaacatggacattggttttagagaaaagcagtgga 451
Query: 206 tggaagttttttttgtattttt-----aatagtcctgaagatacatatatatgatgaaaa 260
|||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 450 tggaag-tttttttgtattttttaataaatagtcctgaagatacatatatatgaggaaaa 392
Query: 261 ttaatcttgactcctagcttatacataaaaatctcaattctcattgatttatagatatac 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 391 ttaatcttgactcctagcttatacataaaaatctcaattctcattgatttatagacgtac 332
Query: 321 atataaaatgtttttaaagtaaagcttctataaaaattagagaatggccaggtgatggtg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atataaaatgtttttaaagtaaagcttctataaaaattagagaatggccaggtgatggtg 272
Query: 381 acacacacctttaatatcagaaggcagaggcagacagaactcttgagtttgaggccagcc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acacacacctttaatatcagaaggcagaggcagacagaactcttgagtttgaggccagcc 212
Query: 441 tggtctacacaacaaattctaggagagcaaggctacacagagaaaccctgtcttgaaaat 500
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 211 tggtctacagaacaaattctaggagagccaggctacacagagaaaccctgtcttgaaaat 152
Query: 501 accgatacatatattttttcaagaacttgagatagattccttgagacag 549
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 actgatacatatattttttcaagaacttgagatagattccttgagacag 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 951
Length adjustment: 10
Effective length of query: 539
Effective length of database: 941
Effective search space: 507199
Effective search space used: 507199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_m12.g1 MSMg01no482_m12.g1 CHROMAT_FILE:
MSMg01no482_m12.g1 PHD_FILE: MSMg01no482_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:46 2005
(612 letters)
>mm_chr7_117388407_117389424
Length = 1018
Score = 1129 bits (584), Expect = 0.0
Identities = 604/614 (98%), Gaps = 6/614 (0%)
Strand = Plus / Plus
Query: 5 aagtctggaaattgctttgttttccagcaccaggattagcgtgggctgagtcagtggccg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aagtctggaaattgctttgttttccagcaccaggattagcgtgggctgagtcagtggccg 264
Query: 65 gggcatggtctgccggcctcatattctggaattctgtgctctgatacaggactgtgtccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggcatggtctgccggcctcatattctggaattctgtgctctgatacaggactgtgtccc 324
Query: 125 cttgctggagtatatttttagatttgcgttttaagacactctcatagtctgatacttcga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgctggagtatatttttagatttgcgttttaagacactctcatagtctgatacttcga 384
Query: 185 agtcctagaactggggaggaaacattccccagcagacaacagaattggagcagagccttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtcctagaactggggaggaaacattccccagcagacaacagaattggagcagagccttg 444
Query: 245 tcacgcggccagtgaggctgtgataggacagtgtgcctggccacctggagcggaagctga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcacgcggccagtgaggctgtgataggacagtgtgcctggccacctggagcggaagctga 504
Query: 305 ccccatccaaggaaagccgcagggtttccatgtagtgggctcagatcagcaaagatcagc 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 505 ccccatccaaggaaagccgcagggtttccatgtagtaggctcagatcagcaaagatcagc 564
Query: 365 atcttgtcttgaaatttgtgttggggaggaaaaaacccagtagtgtgaggagtggtaaga 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcttgtcttgaagtttgtgttggggaggaaaaaacccagtagtgtgaggagtggtaaga 624
Query: 425 ggagcaggattgctgttccttatgcatgggagtaggagctattccggttcatacagcttg 484
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 ggagcaggattgctgttccttatgcatgggagtaggagctgttccggttcatacagcttg 684
Query: 485 gcggatcccatggtgagcctgactaagtagcttagtcaataaagggcaaatagattagat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcggatcccatggtgagcctgactaagtagcttagtcaataaagggcaaatagattagat 744
Query: 545 caacttttacagtt------ttatgtgtttattgtctgtatgaagaggaagagggtacgt 598
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caacttttaaagttacgtttttatgtgtttattgtctgtatgaagaggaagagggtacgt 804
Query: 599 gtgcttgtggaggt 612
||||||||||||||
Sbjct: 805 gtgcttgtggaggt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1018
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1008
Effective search space: 606816
Effective search space used: 606816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
