BAC Information

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BAC

Clone NameMSMg01-483D09
Chromosome7 (Build37)
Map Location 70,019,645 - 70,020,091
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
Downstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483D09.T7 (MSMg01no483_d09.b1)MSMg01-483D09.TJ (MSMg01no483_d09.g1)
ACCAG563192AG563193
length769768
length of high quality
(start - end)		644 (51 - 694)637 (81 - 717)
definitionCHROMAT_FILE: MSMg01no483_d09.b1 PHD_FILE: MSMg01no483_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:20 2005CHROMAT_FILE: MSMg01no483_d09.g1 PHD_FILE: MSMg01no483_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTTATGCAGCTGTGGAATCTACAGATAATTGTAATACAC
TCCTTTGATATCCACCTTTTAAACCCCTTCAACACTGTTTGGCTCTAAAG
CTGCTTTCTTAGTGCTAGCAATAAGAATACATTCATTTAATCTAAATTTA
AATTAAGGTTGAATCTTGGCCTTTCTCAGTGGATTTGAACATCACAAAAA
TCTATGAAAATGGAACATACTGGGTTGGAAATAAATGATCATCAAAGCTT
CTGGGTTCCATCTGTGCCTGGGATGACCCTGTGCCACAGCTAACTGGACC
CTAGTCCCACCCTGCACTCCAGTTCTGCCCAGAGAGAGCAGGTCTCCAGG
AAAGCTAACACACCAAAGATCACAGGAGTGCTGACATACCTAAGACCACA
GGCTCACAGAATCACAGGAGGGACAATCAAAACCAGCTATCACCAAAGAG
AATAGGATGTCGAGAGGCAAGCACAAGAATCTGAACAATAGAAACCAAGG
CTACCTGGCAGCATCAGAACCCAGTTCTTCCAAAACAGCAAGCCCTGGAT
ACCCCAACACACCTGAAAAGCAAGATTCTGATTTAAAATCACATCTCATG
ATGATGAGAGAGGACGTTAAGAAGGACATAAGTAACTCCCTTAAAGAAAT
ACAGGAGATCACAGGTAAACCGGCAGAAAACCTTAGGAGGAAACACATAA
GTCCCTTTAAGAATACAGA

NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATG
ATAAAAGCAATCTACAGCAAACCAGTAGCGAACATCAAAATAAATGGTGA
GAAGCTGGAAGTAATCCCAGTACAATCAGGGACTAGACAAGGCTGTCCAC
TCTCTCCCTACCTATTCAATATTGTACTTGAAGTCCTAGCCAGAACAATT
AGACAACAAAAGGAGATCAAGGGGATACAATTTGGAAAGGAAGAAGTCAA
AATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAA
TTTTTACCAGAGAACTCCAAAGCCTGATAAACAGCTTCAGTGGAGTACCT
GGGTATAAAATTAACTCAAACAAGTCAATGGCCTTTCTGTACACAAAAGA
TAAACAGGATGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCA
CAAATAATATAAAATACCTTGGCGTGACTCTAACAAAGGAAGTGAAAGAT
CTGTATGATAAGATCTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCT
CATAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATAG
TAAAAATGGCTATCTTGACAAAAGCAATCTACAGATTCAATGCAATCCCC
CATCAAAACTCAAATTCAATTCTTCAACGAATTATAAAGTGCAATGGGCA
GAATCATCTGGAATAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_d09.b1 MSMg01no483_d09.b1 CHROMAT_FILE:
MSMg01no483_d09.b1 PHD_FILE: MSMg01no483_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:20 2005
         (644 letters)



>mm_chr7_70019645_70020688
          Length = 1044

 Score =  826 bits (427), Expect = 0.0
 Identities = 442/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttatgcagctgtggaatctacagataattgtaatacactcctttgatatcca 64
           ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaattctcttatgtagctgtggattctacagataattgtaatacactcctttgatatcca 388

                                                                       
Query: 65  ccttttaaaccccttcaacactgtttggctctaaagctgctttcttagtgctagcaataa 124
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct: 387 ccttttaaaccccttcaacactgtttggctctaaggctgctttctttgtgctagcaacaa 328

                                                                       
Query: 125 gaatacattcatttaatctaaatttaaattaaggttgaatcttggcctttctcagtggat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaatacattcatttaatctaaatttaaattaaggttgaatcttggcctttctcagtggat 268

                                                                       
Query: 185 ttgaacatcacaaaaatctatgaaaatggaacatactgggttggaaataaatgatcatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgaacatcacaaaaatctatgaaaatggaacatactgggttggaaataaatgatcatca 208

                                                                       
Query: 245 aagcttctgggttccatctgtgcctgggatgaccctgtgccacagctaactggaccctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aagcttctgggttccatctgtgcctgggatgaccctgtgccacagctaactggaccctag 148

                                                                       
Query: 305 tcccaccctgcactccagttctgcccagagagagcaggtctccaggaaagctaacacacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tcccaccctgcactccagttctgcccagagagagcaggtctccaggaaagctaacacacc 88

                                                                       
Query: 365 aaagatcacaggagtgctgacatacctaagaccacaggctcacagaatcacaggagggac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  aaagatcacaggagtgctgacatacctaagaccacaggctcacagaatcacaggagggac 28

                                      
Query: 425 aatcaaaaccagctatcaccaaagaga 451
           |||||||||||||||||||||||||||
Sbjct: 27  aatcaaaaccagctatcaccaaagaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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