BAC Information

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BAC

Clone NameMSMg01-483D14
Chromosome7 (Build37)
Map Location 19,714,748 - 19,715,322
singlet/doubletsinglet
Overlap geneFbxo46
Upstream geneIgfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866
Downstream geneQpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483D14.T7 (MSMg01no483_d14.b1)MSMg01-483D14.TJ (MSMg01no483_d14.g1)
ACCAG563202AG563203
length1,390789
length of high quality
(start - end)		---576 (77 - 652)
definitionCHROMAT_FILE: MSMg01no483_d14.b1 PHD_FILE: MSMg01no483_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:21 2005CHROMAT_FILE: MSMg01no483_d14.g1 PHD_FILE: MSMg01no483_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTTTCGTTCTTTATGACGCCGCCTCACACATATAAATATCACTATTTT
TTTTATTATATAAAGAAACGAGCAACAGAAATTCGCCTCTTTCTCCTCCC
TGCTTCTCGTGTATTATATCTGTCGTTTGTGCCTCGTCCTTTCGTCGATC
TTTGTTACTATAATTATACCTTCATACTCCCCGCACCGCCCCTTTTATTA
TCACGCCCATTATATACTCATCATATTCTCCGCCCTATATTATTTAGAGC
CTCCACGTACGCAATTAAGTGTACAATATTTTTACTATACCTACATTAGT
GCCGCTCGCCCGCTTGTGCTCTGCCAAAGTGCGTGNGTCATTCTACAATA
TCACAAGAGAAATGAATTGTATTATATGTTTCTGCCGCGCTAGTCGTCGA
CCATGTTTGAGCTATATTTCTATTCTAATCAGCTATACAAGTGCTAAACC
CTCCCGATATTAGCTAGCCGCCTACGACTACGAGCGATACTCCGTCCTCC
TACTTTGATCTCTCTCACAATACCGTCATATAATTCTCATATCATTAATA
GTATGTCACAGTGTGCTNCTTCTCTCAATATATAGTCTAAGCAGACGCGC
TCTTGTCNAATCTACTCGAGTACGATTCTGCTTCGTTTGTGGTCTATGAT
AAGATATGTAAATATACATCTACAACCTACTCTCCTGTGTATACGATATA
TCAAGTGCCTGCGCGCACATACAATAANTCATGTTCTNCGCGTGATCGGA
TATAACCTCATGGTATTCTCTACTCTATATCCTCTCTGTGTTGTATATGA
CCACACCTATACCTGAGCGTGACGCATACCATTGTGACGGTCGTACCTAC
TCGTCGACNNCTCCTCTATCGTTCTAGTATCAGAGTATCTATCTATATAG
CGTGNCATATTATATTCATTATTCATCTGTGTGTGTATACGACTTNCTCA
ACTCACGTGTAGTACTCATACACTCGAGTGCTCTCTACANAGTCTACTAT
GAGACTATGACGATCCGCTAACATGACGTATTGCATATCGTATATATCTA
TATAACGACGATACAATCGANTGTGTTCTTATGACGACGTTGGTAGCGAC
TAAATGACTCGACTTATATTTCTGAGCTACATATTATTAATATGTTCTTC
TTATCTATATTCTGATGTCGCTAGTCTAGCCGCATCCAAATCTCCCGTAA
TATGCGATAAGATNTATCATGATATATTATATCTATCTATCGACTCTACT
CCCGTCCGCACTCTTAATGATTATGTGCGCACTCTCAGCTTGTTTATGAT
CTTGTATATTATGACATCGCCATCTCGTGCTGTGTCATNTCCACCTGCTA
CTCTGCTCTTATTCTCTGCTGAATTATATATATATGTGGG

NNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCAAGCTCTAGGCCAGCCAGG
GCTACATAGATGAGACCCTGTCTCAAAAGAAAAAAACAACAGACATGCCA
AGTGATTGAGGAAGACACTTGGTGTTGATCTCTGGCCACCACACACTCAT
GTGCATTCACAGGCTCTTATATACTCCCATCCAAGCTCATTCGTATGCCA
TACGTAGACGGGAAATAGAGACATGAAAATGAAACACGTCAGTTGAGGAG
CATGCGTGGGCTCCCAGTACTCCGAGGCAGGATCAAGAGTTTGAGGCCAG
GCTGGAGTACACACGGAGACCCTAGAGAGAGATGTAGGGATTATTTTTTT
ATGATTTATTTATTATGTGTATATGAGTACACTATCACTGTCTTCAGACA
CACCAGAAGAGGGTATCAGATGGTTCTGAGCCACCATGTGGTTGCTGGAA
TTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTCTGAGC
CACCTCTCCTGCCCTAGGTGAGTTAATTTGAAGTGCTTTCCTGCTAACTG
CTATTGTGACTAACATGTTTACGCTGCCTGTGAGTGGATGTCTTTCCCCT
TCCTGTGAGCTATTACTGGGGAGCCCAGTGTCATCAGTGCATGCACTCAN
GAGGGGCCACAGTGTGTGTATCTCANGGTTCGGGAATGTGCATCCTCTAA
TACGAAGACACTTTGAGAAGGTGTGGAGTGTGAACCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_d14.g1 MSMg01no483_d14.g1 CHROMAT_FILE:
MSMg01no483_d14.g1 PHD_FILE: MSMg01no483_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:21 2005
         (576 letters)



>mm_chr7_19714547_19715522
          Length = 976

 Score = 1052 bits (544), Expect = 0.0
 Identities = 568/576 (98%), Gaps = 1/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcaagctctaggccagccagggctacatagatgagaccctgtctcaaaagaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 202 aaggcaagctctaggccagccagggctacatagatgagacc-tgtctcaaaagaaaaaaa 260

                                                                       
Query: 61  caacagacatgccaagtgattgaggaagacacttggtgttgatctctggccaccacacac 120
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 261 caacagacatgccaagtgattgaggaagacacttggtgttgccctctggccaccacacac 320

                                                                       
Query: 121 tcatgtgcattcacaggctcttatatactcccatccaagctcattcgtatgccatacgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgtgcattcacaggctcttatatactcccatccaagctcattcgtatgccatacgta 380

                                                                       
Query: 181 gacgggaaatagagacatgaaaatgaaacacgtcagttgaggagcatgcgtgggctccca 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaggaaatagagacatgaaaatgaaacacgtcagttgaggagcatgcgtgggctccca 440

                                                                       
Query: 241 gtactccgaggcaggatcaagagtttgaggccaggctggagtacacacggagaccctaga 300
           || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gtgctccgaggcaggatcaagagtttgaggccaggctggagtacacactgagaccctaga 500

                                                                       
Query: 301 gagagatgtagggattatttttttatgatttatttattatgtgtatatgagtacactatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagagatgtagggattatttttttatgatttatttattatgtgtatatgagtacactatc 560

                                                                       
Query: 361 actgtcttcagacacaccagaagagggtatcagatggttctgagccaccatgtggttgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtcttcagacacaccagaagagggtatcagatggttctgagccaccatgtggttgct 620

                                                                       
Query: 421 ggaatttgaactcaggacctctggaagagcagtcagtgctcttaacctctgagccacctc 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggatttgaactcaggacctctggaagagcagtcagtgctcttaacctctgagccacctc 680

                                                                       
Query: 481 tcctgccctaggtgagttaatttgaagtgctttcctgctaactgctattgtgactaacat 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 tcctgccctaggtgagttaatttgaagtgctttgctgctaactgctattgtgactaacat 740

                                               
Query: 541 gtttacgctgcctgtgagtggatgtctttccccttc 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtttacgctgcctgtgagtggatgtctttccccttc 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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