Query= MSMg01no483_m19.b1 MSMg01no483_m19.b1 CHROMAT_FILE:
MSMg01no483_m19.b1 PHD_FILE: MSMg01no483_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:08 2005
(580 letters)
>mm_chr7_95018293_95019272
Length = 980
Score = 826 bits (427), Expect = 0.0
Identities = 486/535 (90%), Gaps = 47/535 (8%)
Strand = Plus / Minus
Query: 76 aaataaataaataaataaataaataaataaaaatactatgccaggtgctagttacaggct 135
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 534 aaataaataaataaataaataaataaat-aaaatactatgccaggtgctagttacaggct 476
Query: 136 ctgtgatggtgttactaattttcttactgaaacaaaaatctacaaaaattatgaacttag 195
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 475 ctgtgatggtgttactaattttcttactgaaacaaaaatctacaaaaattatgaccttag 416
Query: 196 gtagcagggataatttatcatttcaagagcaaaggtttctgtgtaatattttccaaagaa 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtagcagggataatttatcatttcaagagcaaaggtttctgtgtaatattttccaaagaa 356
Query: 256 tattgattttctgaaaaatcaatttagaaaattttgttcc--------ac---------- 297
|||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 355 tattgattttctgaaaaatcaatttagaaaattttgttccccatatatacatatatatat 296
Query: 298 ----------------------------atatatatataaactattgcaacaatgctgtc 329
||||||||||||||||||||||||||||||||
Sbjct: 295 atatatatatatatatatatatatatatatatatatataaactattgcaacaatgctgtc 236
Query: 330 cctgtttttggttttcaccaacagatttataatttggaataactatagtaatgagtgaac 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cctgtttttggttttcaccaacagatttataatttggaataactatagtaatgagtgaac 176
Query: 390 atctttgaaatgttttcttttcattccatcactcagatttacatataacaaattgactac 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 atctttgaaatgttttcttttcattccatcactcagatttacatataacaaattgactac 116
Query: 450 cagataaatgctctaaagcttctattagtggaaaaataattagtataatggcctacagca 509
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 115 cagataaatgctctaaagcttctattagtggaaaaataattagtataatggcctccagca 56
Query: 510 taatcagtgcttttcatgaccttagtcttgtttatatacactgtcatattctggg 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 taatcagtgcttttcatgaccttagtcttgtttatatacactgtcatattctggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_m19.g1 MSMg01no483_m19.g1 CHROMAT_FILE:
MSMg01no483_m19.g1 PHD_FILE: MSMg01no483_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:08 2005
(609 letters)
>mm_chr7_94882130_94883138
Length = 1009
Score = 1149 bits (594), Expect = 0.0
Identities = 606/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Plus
Query: 1 tctgatgatgatactgcattgttgggctagtattcagagacatcaaggccgccttaaggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 200 tctgatgatgatactgcattgttgggctagtattcagagacatcaaggccaccttaaggt 259
Query: 61 catttgtattctgctgaaatgatataattgagtccaataaagtaactaaccaaaggagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catttgtattctgctgaaatgatataattgagtccaataaagtaactaaccaaaggagaa 319
Query: 121 agtaatttgtgatgtgatatatgcatttgatgtgtgtgtgtgtgcattcctgtgtaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtaatttgtgatgtgatatatgcatttgatgtgtgtgtgtgtgcattcctgtgtaaata 379
Query: 181 aataaatatttaaatgaaaagtaaag-aaaaaagaaagaaaaacatatgtatttgtatat 239
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 380 aataaatatttaaatgaaaagtaaagaaaaaaagaaagaaaaacgtatgtatttgtatat 439
Query: 240 tagcaaacaagtaatagccataaaaggaaaaacaaaaacaaaaacaaaatttagattaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagcaaacaagtaatagccataaaaggaaaaacaaaaacaaaaacaaaatttagattaca 499
Query: 300 aaagtaggaactttttttttaaatcccaatggtatattttataataaaaacatcaaacct 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagtaggaacttttttttaaaatcccaatggtatattttataataaaaacatcaaacct 559
Query: 360 gaaaatcagaaaatattgttgatatcagtgtctttgtggacagacctagaacaagtgatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaaaatcagaaaatattgttgatatcagtgtctttgtggacagacctagaacaagtgatg 619
Query: 420 tagaaaaaccagaaactgtcatgttgtctttacattgaattgcattatcatttacaaact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagaaaaaccagaaactgtcatgttgtctttacattgaattgcattatcatttacaaact 679
Query: 480 ctgagaagtttaaacaataaaagtttgtttcagccaagttttggaccattttgttaaatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgagaagtttaaacaataaaagtttgtttcagccaagttttggaccattttgttaaatt 739
Query: 540 ccttcacctgcttgattatatttttccttcatttctttaagggatttgtttcccttttaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccttcacctgcttgattatatttttccttcatttctttaagggatttgtttcccttttaa 799
Query: 600 gggcttctac 609
||||||||||
Sbjct: 800 gggcttctac 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
