Query= MSMg01no483_n20.b1 MSMg01no483_n20.b1 CHROMAT_FILE:
MSMg01no483_n20.b1 PHD_FILE: MSMg01no483_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:13 2005
(362 letters)
>mm_chr7_122280147_122280908
Length = 762
Score = 638 bits (330), Expect = 0.0
Identities = 351/358 (98%)
Strand = Plus / Minus
Query: 5 gaattctccccttcgttgccttcatcatagcactttatcacagcaagaggaaaaggaact 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gaattctcccctaggttgccttcatcatagcactttatcacagcaagaggaaaaggaact 700
Query: 65 aagacaggaggtgactagacaaaagtcattagcctgccaagcacactggcaatctcagca 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 699 aagacaggaggtgactagacaaaagtcattagcctgccgagcacactggcaatctcagca 640
Query: 125 cttggaaatctgaagcaggtatggcaaatttgagattagtatgggctgcatggtgaatct 184
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 639 cttggaaagctgaagcaggtatggcaagtttgagattagtatgggctgcatggtgaatct 580
Query: 185 gaggccagcctgaaccagtctctgctaaagatagcaaagacttatctttaaaaaggtcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaggccagcctgaaccagtctctgctaaagatagcaaagacttatctttaaaaaggtcat 520
Query: 245 taccttgtaagcaatagagtcgatgtttaattgctagcactccaaactcacattaagcaa 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 519 taccttgtaagcaatagagtcgatgtttaattgcaagcactccaaactcacattaagcaa 460
Query: 305 gaaggttgattctagatatttcatgaaatacaaatacatttcttatgtctgtatttta 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaaggttgatactagatatttcatgaaatacaaatacatttcttatgtctgtatttta 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_n20.g1 MSMg01no483_n20.g1 CHROMAT_FILE:
MSMg01no483_n20.g1 PHD_FILE: MSMg01no483_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:13 2005
(489 letters)
>mm_chr7_122099138_122100030
Length = 893
Score = 866 bits (448), Expect = 0.0
Identities = 481/494 (97%), Gaps = 6/494 (1%)
Strand = Plus / Plus
Query: 1 tattcattcaattcatctccaatcatctttcctttgcattagctttccctaaggtttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcattcaattcatctccaatcatctttcctttgcattagctttccctaaggtttctc 260
Query: 61 agaaaatactggcagtaagtgacaaaggtacagcttaactgtcactatggtgagcccctt 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaatactggcagtaagtgacaaaggtacagcttaactgtcactatggtgagcccctt 320
Query: 121 ggttcctcttgtataatcgccttatccatgcccccagcttctacacattttcctctgtcc 180
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ggttcctcttatataatcgccttatccatgcccccaacttctacacattttcctctgtcc 380
Query: 181 acactttacttttcttcactaactgcttctgggatt----acagacccctatttcaaaga 236
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 acactttacttttcttcactaactgcttctgggattgattacagacccctatttcaaaga 440
Query: 237 aagagactaggattaactcctcgactttactggggtagcaaacgaactttctggattgta 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagactaggattaactcctcgaccttactggggtagcaaacgaactttctggattgta 500
Query: 297 cattttaggaagcaggatgggagtggggc-gagggagagggctagggttaacaaaaatac 355
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 501 cattttaggaagcaggatgggagtggggctg-gggagagggctagggttaacaaaaatac 559
Query: 356 cagaaggatctagcaacactcactcttaatttcttttcttgtggctcaaaagggctatga 415
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 560 cagaaggatctagcaacactcactattaatttcttttcttgtggctcaaaagggctatga 619
Query: 416 aaaagcagcgtagtctgtcttacatgttctcaggataaaggctgatgaagccacggcagt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 620 aaaagcagcgtagtctgtcttacatgttctcaggataaaggctgatgaagccatggcagt 679
Query: 476 ctttttccattaat 489
||||||||||||||
Sbjct: 680 ctttttccattaat 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 893
Length adjustment: 10
Effective length of query: 479
Effective length of database: 883
Effective search space: 422957
Effective search space used: 422957
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
