BAC Information

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BAC

Clone NameMSMg01-485F08
Chromosome7 (Build37)
Map Location 145,060,595 - 145,185,540
singlet/doubletdoublet
Overlap genenone
Upstream geneMgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
Downstream geneLOC435235, Tcerg1l, LOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485F08.T7 (MSMg01no485_f08.b1)MSMg01-485F08.TJ (MSMg01no485_f08.g1)
ACCAG564803AG564804
length742750
length of high quality
(start - end)		617 (52 - 668)595 (83 - 677)
definitionCHROMAT_FILE: MSMg01no485_f08.b1 PHD_FILE: MSMg01no485_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:14 2005CHROMAT_FILE: MSMg01no485_f08.g1 PHD_FILE: MSMg01no485_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,060,595 - 145,061,207)(145,184,948 - 145,185,540)
sequence
NNNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATAAAGTTTCTGGTACCAGAGTCCAGGAGGGGTCCTCA
GGATTCTGGGGTGGCAGCTCAAGAGTCAGAGTAACCTCAGGGATGGGTGT
GAGCTAGGGGGATGTAGGGGCCATACCTGTGCAGTGTTGTCTGGGAGGAT
ACAGCTGAGGGAGTGGTCTCAGCTTTCACATGCAATCCTGGTCTGAGCTG
GAGATAAATAAGTGGGAATATGCACCCAGAGATGTGGACCAGAGCACTCA
GATAGAGAGAGTGGACCAGGACAGAACTCTCTAGACCTTCTAGTGGGACA
GACTGGCTCTGGAAATAGGGGATGTAGGCTAGGAAGAGAGGTATGAGTCA
AAGACCTCCATGCTCCTTAGGGCTGTGCTCCCAGATGGTTGAGGAAGAGA
AGAGGCCTAGCCCAGTAGCAACACGAGGATGCACACAGCTTGTTTTCTGG
ACACAGCTCAGATCTAGAATGAGAACATCAAAACTCTGCGTCACGCATCA
GGCAGTGGACCAGACGTTCTGATTCTGGGACACTACTTCACCTGTGAAGT
CTTTGGTAGTGATAGTGTCACAATTCTGATTCTTTCTCTCCTATGAGGCA
CAGAAGAGGGACACAAATCCCTGTAAAGGGACACAAGTCCAGCATGTTGT
TCCTGGGCTGGATGCTGGCTTACGGGAGGGACACCCTTGATC

NTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAATACAGCTACTCAT
GGAACAGACCTGGTCCCGAGCCACTTCCAATTCAGAAAGGCAGTCATTAA
CTAACCACCAGACTGCAAGAACTGCCAGTGTCCTGTAAAAGAGAAACATT
GAACTCTGACCTTCAGGGACTTGAGGCTTTAAGCATGTGTGTTGTGTACA
GGGGCAGGAGTAGAGTTGTGTGTATGGATGGACGTAGATATACGTGTGTT
CATGTAGGCATGAGCACAGGTGTGTGTATGTGACTGAATGCTTGTCATAT
GCAGAGACAGTTTTGTGAGCTTGTTTCCTCTACAGTTGTGTGTGCACACA
CCTGTGAACGAGCGTGATGAGTAGTACACGTAGGCATGTGTGCATGTATG
CAGGTGTGTGCTTGCGCAAGGAGAAGAATATGAAATTATGCGTGTGAGGT
CGCTGGGGAATTTTCCCAGGGGCTTGAGGAGAGTGGACAATGGGATTGGT
AATGACAACCTCACCCAGGGGGCAGGCACAGAACGAGCAGAGAGCTTGGC
TGCACTCCAGGACGAGTCTAAGCCATCCAGACTGGCCAGCGTAGAGACCC
CTGAGGCTGTANGTGGGGCTGTGAATGGTGTGCGAAGCAAACACAGAAGA
CTTCTGAACACAAGCTCGAGACAGGATCTCCTGGTAACCCAGCTGTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_f08.b1 MSMg01no485_f08.b1 CHROMAT_FILE:
MSMg01no485_f08.b1 PHD_FILE: MSMg01no485_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:14 2005
         (617 letters)



>mm_chr7_145060391_145061407
          Length = 1017

 Score = 1139 bits (589), Expect = 0.0
 Identities = 607/613 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataaagtttctggtaccagagtccaggaggggtcctcaggattctggggtggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataaagtttctggtaccagagtccaggaggggtcctcaggattctggggtggc 264

                                                                       
Query: 65  agctcaagagtcagagtaacctcagggatgggtgtgagctagggggatgtaggggccata 124
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggctcaagagtcagagtaaccccagggatgggtgtgagctagggggatgtaggggccata 324

                                                                       
Query: 125 cctgtgcagtgttgtctgggaggatacagctgagggagtggtctcagctttcacatgcaa 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 cctgtgcagtgttgtctgggaggatacagccgagggagtggtctcagctttcacatgcaa 384

                                                                       
Query: 185 tcctggtctgagctggagataaataagtgggaatatgcacccagagatgtggaccagagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctggtctgagctggagataaataagtgggaatatgcacccagagatgtggaccagagc 444

                                                                       
Query: 245 actcagatagagagagtggaccaggacagaactctctagaccttctagtgggacagactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actcagatagagagagtggaccaggacagaactctctagaccttctagtgggacagactg 504

                                                                       
Query: 305 gctctggaaataggggatgtaggctaggaagagaggtatgagtcaaagacctccatgctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 gctctggaaataggggatgtaggctaggaagagaggtatgagtcaaagacctccatgctt 564

                                                                       
Query: 365 cttagggctgtgctcccagatggttgaggaagagaagaggcctagcccagtagcaacacg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttagggctgtgctcccagatggttgaggaagagaagaggcctagcccagtagcaacacg 624

                                                                       
Query: 425 aggatgcacacagcttgttttctggacacagctcagatctagaatgagaacatcaaaact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggatgcacacagcttgttttctggacacagctcagatctagaatgagaacatcaaaact 684

                                                                       
Query: 485 ctgcgtcacgcatcaggcagtggaccagacgttctgattctgggacactacttcacctgt 544
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 685 ctgcgtcacgcatcaggcagtggaccagatggtctgattctgggacactacttcacctgt 744

                                                                       
Query: 545 gaagtctttggtagtgatagtgtcacaattctgattctttctctcctatgaggcacagaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaagtctttggtagtgatagtgtcacaattctgattctttctctcctatgaggcacagaa 804

                        
Query: 605 gagggacacaaat 617
           |||||||||||||
Sbjct: 805 gagggacacaaat 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_f08.g1 MSMg01no485_f08.g1 CHROMAT_FILE:
MSMg01no485_f08.g1 PHD_FILE: MSMg01no485_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:15 2005
         (595 letters)



>mm_chr7_145184746_145185740
          Length = 995

 Score = 1017 bits (526), Expect = 0.0
 Identities = 576/593 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   aaatacagctactcatggaacagacctggtcccgagccacttccaattcagaaaggcagt 62
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaatacagctactcgtggaacagacctggtcccgagccacttccaattcagaaaggcagt 736

                                                                       
Query: 63  cattaactaaccaccagactgcaagaactgccagtgtcctgtaaaagagaaacattgaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cattaactaaccaccagactgcaagaactgccagtgtcctgtaaaagagaaacattgaac 676

                                                                       
Query: 123 tctgaccttcagggacttgaggctttaagcatgtgtgttgtgtacaggggcaggagtaga 182
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 675 tctgaccttcagggacttgaggctttaagcatgtgtgatgtgtacaggggcaggagtaga 616

                                                                       
Query: 183 gttgtgtgtatggatggacgtagatatacgtgtgttcatgtaggcatgagcacaggtgtg 242
           | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 615 gctgtgtgtatggatggacgtagatgtacgtgtgttcatgtaggcatgagcacaggtgtg 556

                                                                       
Query: 243 tgtatgtgactgaatgcttgtcatatgcagagacagttttgtgagcttgtttcctctaca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtatgtgactgaatgcttgtcatatgcagagacagttttgtgagcttgtttcctctaca 496

                                                                       
Query: 303 gttgtgtgtgcacacacctgtgaacgagcgtgatgagtagtacacgtaggcatgtgtgca 362
           ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct: 495 gttgtgtgtgcacacacctgtgaacaagcgcgatgaggagtacacgtaggcatgtgtgca 436

                                                                       
Query: 363 tgtatgcaggtgtgtgcttgcgcaaggagaagaatatgaaattatgcgtgtgaggtcgct 422
           || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgcatgcaggtgtgtgcttgtgcaaggagaagaatatgaaattatgcgtgtgaggtcgct 376

                                                                       
Query: 423 ggggaattttcccaggggcttgaggagagtggacaatgggattggtaatgacaacctcac 482
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggggaatttgcccaggtgcttgaggagagtggacaatgggattggtaatgacaacctcac 316

                                                                       
Query: 483 ccagggggcaggcacagaacgagcagagagcttggctgcactccaggacgagtctaagcc 542
           |||||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||
Sbjct: 315 ccagggggcaggcacagaccaagcagagagcttggctggactccaggaagagtctaagcc 256

                                                                
Query: 543 atccagactggccagcgtagagacccctgaggctgtangtggggctgtgaatg 595
           |||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 255 atccagactggccagcatagagacccctgaggctgtaggtggggctgtgaatg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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