BAC Information

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BAC

Clone NameMSMg01-485L05
Chromosome7 (Build37)
Map Location 3,155,736 - 3,156,175
singlet/doubletsinglet
Overlap geneAU018091
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1
Downstream geneLOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485L05.T7 (MSMg01no485_l05.b1)MSMg01-485L05.TJ (MSMg01no485_l05.g1)
ACCAG565083AG565084
length7431,441
length of high quality
(start - end)
483 (50 - 532)---
definitionCHROMAT_FILE: MSMg01no485_l05.b1 PHD_FILE: MSMg01no485_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:44 2005CHROMAT_FILE: MSMg01no485_l05.g1 PHD_FILE: MSMg01no485_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCG
CGGAATTCCCCAGTGGGATCCCGGGCAAAAGGGTGATCAATTGCACCTCA
CTGTCTATTCCCTTTTAGGATTTGCTATCTACTTTGGATATGGGATACAG
CACAGCTTGGAAGAGAAGAATGACCAACAGCCAACAGCCTCAAGCTCCCA
GACTCTCCAGGAACTCCAGGAACATACTCCCAGTGTTGACTTACCTTAAC
TGGAGAAACGGGATGCTTCCAGGACCCCATGGGCATCAGTTTCCTTCCCT
TCCCTTCCCTTCCCTTCCCTTTCCCTTTCCTCCCTCTTTCCCTTCCCCCT
TTTCCTTTCCTCCCTCTTTCCCTTCCTTTTATTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTG
GGGCGGGTTGGGAAGGCAGTACTGGGAATTGAACTTAGAGTCTTGTGCGT
CTGAGGCAAATGCTCCATCACTGACCTAATCTCTTGTAGGTATCTTTAGG
TCAAAGGAAAAGGTTTGAATATTTGGGGGGTTGAAAATGGGACCTCCTTT
TCCTTAACTTTTTTTTTTCCCCCCTTCCCCTTTTGGGGGACTTTATTTCC
TTGTGAAATTTTTGGGGGAGGAAAATATCCCCTAAATACATTTTTTTTTT
TTTTTTTCTTCTATTTCTTTTTTTTGGGGGGGGGGGGGCTGTT
GTGGTGATTGTTTATATGCTATCTACGAGTGATCAGAGAGCAGATGACCG
TTATACCTCCTTATTAGTGTCNCNGTGTGCCACCGTGTCCGAGTACTCTC
CTCGAGGAGCCAGACTGANGTAGAGANGCAGTAGGGNGAGTAGCCTGTGC
AGGTAGAGGAGTGAAGACGTCGTAGTTGCATCAGCTATACATGATCTATC
ANCTAGACGACATGATACATGCAGTCAGACGATGCAGTATGAGTATATTA
TACCTTCACTCATCTCAGCCGACGAGAAACGAGGAATAACGGCGTCATAG
TACATTATAGTCTGTTCTAACACATACTAAAGTGATATGAAACGATGATC
TCACACGAGAAGATCGACATACACCACTATACATAACGCTGTATACTGCC
CGCCGTGTCGGATAGTATATTAATGAGTTTTGACGCTCACTCTATTAGCC
GTTCTCTCTGGGCTGCTTGTGTCTGCTCACGCAGAAGATTATCTATACAT
TATTATATTGAGTTATGTCGTCTCTTGCACCATCCGCACTTAGTGTACTC
ATGATTGAGTGATGTTATGTACTATACATTGCGACTATATATGATACTCC
ACACTCCCGCTCCTTGTCTGAGTACGACTAGTAGTGCACTTATATGAACG
GTAGGACTAGAAATGTAATCCGCGCCGTGTATATCTAAGTATTTATATGA
TATTNATAGTTCTAGTATGCGAGCGAAGATGAAGTTGTATAGTATATCAT
GACTATGTTTCTATGTCTGATACANTGACCTTCGATACGTCAAGATATAT
GCNTAAGAAGATACGTGTCATAGAANATGCGTCCGAGACGATGACCCGCC
AGAGGTAGATANAGCACCTATAGTACACATGTATAGCACTCATATCATAT
ATTCACTGTGTATATATAAGCACTCTCATTTTCTATGACANCTACAACAT
CACATGACCTCATCTCACGCCGCTCTCGTATGTGAATCGATCTGCTGTAT
CTTGTTATTATGNTAGACGACGNGCGTGTCCACATATATATGTATTGTGC
GNTACTCTCTGTCCGTCTCTCATCCACATTTATGTCTCATTCATATATGT
GACGAGCGTAGCGCANCTACCGTTATTACGTCATCTGTTGCACTAGTGAG
TCAGTGTCTGTGTGACGCTGNCTACTAGCACGCCGTAAAANGTATGTCAC
CCNTATTCTATTGACACNACGCTGTCATCGATATGTGAAACTACGCACAC
TCGCTCTCGCGCGNTAGTATATATGTCTCTTGGAATGATGATTATNATTG
TGAAGGTATGTGCTACTATGAGTAGTCACATAAACGCANCGACNCAGCGC
ACTCACGATAATNTATCATGAACGAGAGATGGAANACTCGATGATCACGG
CTGTATATTGCGATGTCACTATATATTCGTGCTCGCGCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_l05.b1 MSMg01no485_l05.b1 CHROMAT_FILE:
MSMg01no485_l05.b1 PHD_FILE: MSMg01no485_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:44 2005
         (483 letters)



>mm_chr7_3155736_3156618
          Length = 883

 Score =  797 bits (412), Expect = 0.0
 Identities = 436/450 (96%), Gaps = 10/450 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccccagtgggatcccgggcaaaagggtgatcaattgcacctcactgtctattccc 63
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaattccccagtgggaacctgggcaaaagggtgatcaattgcacctcactgtctattccc 381

                                                                       
Query: 64  ttttaggatttgctatctactttggatatgggatacagcacagcttggaagagaagaatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttttaggatttgctatctactttggatatgggatacagcacagcttggaagagaagaatg 321

                                                                       
Query: 124 accaacagccaacagcctcaagctcccagactctccaggaactccaggaacatactccca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 accaacagccaacagcctcaagctcccagactctccaggaactccaggaacatactccca 261

                                                                       
Query: 184 gtgttgacttaccttaactggagaaacgggatgcttccaggaccccatgggcatcagttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgttgacttaccttaactggagaaacgggatgcttccaggaccccatgggcatcagttt 201

                                                                       
Query: 244 ccttcccttcccttcccttcccttccctttccctttcctccctctttcccttcccccttt 303
           |||||||||||||||||||          |||||||||||||||||||||||||||||||
Sbjct: 200 ccttcccttcccttccctt----------tccctttcctccctctttcccttcccccttt 151

                                                                       
Query: 304 tcctttcctccctctttcccttccttttattctctctctctctctctctctctctctctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tcctttcctccctctttcccttccttttattctctctctctctctctctctctctctctc 91

                                                                       
Query: 364 tctctctctctctctctgtgtgtgtgtgtgtgtgtgtggggcgggttgggaaggcagtac 423
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  tctctctctctctctctctctgtgtgtgtgtgtgtgtggggcgggttgggaaggcagtac 31

                                         
Query: 424 tgggaattgaacttagagtcttgtgcgtct 453
           ||||||||||||||||||||||||||||||
Sbjct: 30  tgggaattgaacttagagtcttgtgcgtct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)